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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
129872-130010
(-)
AdoCbl
128549-129818 (-)
PAZ_c01150
PAZ_c01150
Operon
DOOR ID:
1057633
PAZ_c01060,
PAZ_c01070,
PAZ_c01080,
PAZ_c01090
(bchD)
,
PAZ_c01100
(cobN)
,
PAZ_c01110,
PAZ_c01120,
PAZ_c01130,
PAZ_c01140,
PAZ_c01150
View Structure
2
186418-186521
(+)
TPP
186555-187185 (+)
PAZ_c01670
PAZ_c01670
Operon
DOOR ID:
1057647
PAZ_c01670,
PAZ_c01680
View Structure
3
382851-383037
(-)
cobalamin
381034-381793 (-)
PAZ_c03530
PAZ_c03530
Operon
DOOR ID:
1057680
PAZ_c03520,
PAZ_c03530,
PAZ_c03540
View Structure
4
454939-455076
(+)
cobalamin
455107-455863 (+)
cobI
PAZ_c04320
Operon
DOOR ID:
1057701
PAZ_c04320
(cobI)
,
PAZ_c04330
(cbiF)
,
PAZ_c04340
(cbiH)
,
PAZ_c04350,
PAZ_c04360
View Structure
5
462267-462445
(+)
cobalamin
462532-463552 (+)
PAZ_c04380
PAZ_c04380
Operon
DOOR ID:
1057702
PAZ_c04370,
PAZ_c04380,
PAZ_c04390,
PAZ_c04400
View Structure
6
472002-472116
(+)
cobalamin
472158-472773 (+)
btuR1
PAZ_c04490
Operon
DOOR ID:
1057705
PAZ_c04490
(btuR1)
,
PAZ_c04500
(cobB)
,
PAZ_c04510
(cysG)
View Structure
7
476779-476886
(+)
cobalamin
476980-478648 (+)
cobT1
PAZ_c04530
Operon
DOOR ID:
1057706
PAZ_c04530
(cobT1)
,
PAZ_c04540
(cobS)
,
PAZ_c04550
View Structure
8
565820-565931
(-)
TPP
564303-564573 (-)
thiS
PAZ_c05460
Operon
DOOR ID:
1057727
PAZ_c05440
(moeB)
,
PAZ_c05450
(thiG)
,
PAZ_c05460
(thiS)
,
PAZ_c05470
(thiO)
View Structure
9
648313-648565
(+)
cobalamin
648644-650555 (+)
mutA
PAZ_c06330
Operon
DOOR ID:
1057745
PAZ_c06330
(mutA)
,
PAZ_c06340
(mutB)
,
PAZ_c06350
View Structure
10
711632-711818
(+)
cobalamin
712868-713903 (+)
PAZ_c06970
PAZ_c06970
Operon
DOOR ID:
1057759
PAZ_c06930,
PAZ_c06940,
PAZ_c06950,
PAZ_c06960,
PAZ_c06970,
PAZ_c06980,
PAZ_c06990
View Structure
11
855386-855528
(+)
cobalamin
855603-857175 (+)
PAZ_c08370
PAZ_c08370
Single gene
DOOR ID:
3671505
PAZ_c08370
View Structure
12
937770-937883
(+)
TPP
938755-939322 (+)
thiE2
PAZ_c09230
Operon
DOOR ID:
1057808
PAZ_c09220
(thiM)
,
PAZ_c09230
(thiE2)
,
PAZ_c09240
(ldh2)
,
PAZ_c09250
(sfcA2)
View Structure
13
1773332-1773399
(-)
cobalamin
1772260-1773136 (-)
PAZ_c17320
PAZ_c17320
Operon
DOOR ID:
1057967
PAZ_c17310,
PAZ_c17320
View Structure
14
1866424-1866558
(-)
FMN
1865354-1866326 (-)
ribD
PAZ_c18260
Operon
DOOR ID:
1057988
PAZ_c18210
(purH)
,
PAZ_c18220
(purN)
,
PAZ_c18230
(ribH)
,
PAZ_c18240
(ribBA)
,
PAZ_c18250
(ribE)
,
PAZ_c18260
(ribD)
View Structure
15
2014155-2014222
(+)
cobalamin
2014417-2015293 (+)
PAZ_c19850
PAZ_c19850
Operon
DOOR ID:
1058020
PAZ_c19820
(korA)
,
PAZ_c19830
(korB)
,
PAZ_c19840,
PAZ_c19850,
PAZ_c19860,
PAZ_c19870,
PAZ_c19880
View Structure
16
2107068-2107135
(+)
cobalamin
2107330-2108206 (+)
PAZ_c20720
PAZ_c20720
Operon
DOOR ID:
1058037
PAZ_c20720,
PAZ_c20730,
PAZ_c20740
View Structure
17
2228569-2228769
(+)
cobalamin
2228880-2231451 (+)
nrdA
PAZ_c21980
Operon
DOOR ID:
1058065
PAZ_c21980
(nrdA)
,
PAZ_c21990
(nrdB)
View Structure
18
2251623-2251864
(-)
cobalamin
2249204-2251547 (-)
nrdD
PAZ_c22170
Operon
DOOR ID:
1058070
PAZ_c22160
(nrdG)
,
PAZ_c22170
(nrdD)
View Structure
Genome:
Propionibacterium acnes 266
(
NC_017534.1
);
Phylum:
Actinobacteria
a:19:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"129872-130010";i:6;s:1:"-";i:7;s:6:"AdoCbl";i:8;s:0:"";i:9;s:13:"128549-129818";i:10;s:1:"-";i:11;s:10:"PAZ_c01150";i:12;s:0:"";i:13;s:10:"PAZ_c01150";i:14;s:6:"Operon";i:15;s:7:"1057633";i:16;s:121:"PAZ_c01060;PAZ_c01070;PAZ_c01080;PAZ_c01090(bchD);PAZ_c01100(cobN);PAZ_c01110;PAZ_c01120;PAZ_c01130;PAZ_c01140;PAZ_c01150";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"186418-186521";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"186555-187185";i:10;s:1:"+";i:11;s:10:"PAZ_c01670";i:12;s:0:"";i:13;s:10:"PAZ_c01670";i:14;s:6:"Operon";i:15;s:7:"1057647";i:16;s:21:"PAZ_c01670;PAZ_c01680";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"382851-383037";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"381034-381793";i:10;s:1:"-";i:11;s:10:"PAZ_c03530";i:12;s:0:"";i:13;s:10:"PAZ_c03530";i:14;s:6:"Operon";i:15;s:7:"1057680";i:16;s:32:"PAZ_c03520;PAZ_c03530;PAZ_c03540";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"454939-455076";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"455107-455863";i:10;s:1:"+";i:11;s:4:"cobI";i:12;s:0:"";i:13;s:10:"PAZ_c04320";i:14;s:6:"Operon";i:15;s:7:"1057701";i:16;s:72:"PAZ_c04320(cobI);PAZ_c04330(cbiF);PAZ_c04340(cbiH);PAZ_c04350;PAZ_c04360";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"462267-462445";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"462532-463552";i:10;s:1:"+";i:11;s:10:"PAZ_c04380";i:12;s:0:"";i:13;s:10:"PAZ_c04380";i:14;s:6:"Operon";i:15;s:7:"1057702";i:16;s:43:"PAZ_c04370;PAZ_c04380;PAZ_c04390;PAZ_c04400";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"472002-472116";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"472158-472773";i:10;s:1:"+";i:11;s:5:"btuR1";i:12;s:0:"";i:13;s:10:"PAZ_c04490";i:14;s:6:"Operon";i:15;s:7:"1057705";i:16;s:51:"PAZ_c04490(btuR1);PAZ_c04500(cobB);PAZ_c04510(cysG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"476779-476886";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"476980-478648";i:10;s:1:"+";i:11;s:5:"cobT1";i:12;s:0:"";i:13;s:10:"PAZ_c04530";i:14;s:6:"Operon";i:15;s:7:"1057706";i:16;s:45:"PAZ_c04530(cobT1);PAZ_c04540(cobS);PAZ_c04550";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"565820-565931";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"564303-564573";i:10;s:1:"-";i:11;s:4:"thiS";i:12;s:0:"";i:13;s:10:"PAZ_c05460";i:14;s:6:"Operon";i:15;s:7:"1057727";i:16;s:67:"PAZ_c05440(moeB);PAZ_c05450(thiG);PAZ_c05460(thiS);PAZ_c05470(thiO)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"648313-648565";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"648644-650555";i:10;s:1:"+";i:11;s:4:"mutA";i:12;s:0:"";i:13;s:10:"PAZ_c06330";i:14;s:6:"Operon";i:15;s:7:"1057745";i:16;s:44:"PAZ_c06330(mutA);PAZ_c06340(mutB);PAZ_c06350";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"711632-711818";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"712868-713903";i:10;s:1:"+";i:11;s:10:"PAZ_c06970";i:12;s:0:"";i:13;s:10:"PAZ_c06970";i:14;s:6:"Operon";i:15;s:7:"1057759";i:16;s:76:"PAZ_c06930;PAZ_c06940;PAZ_c06950;PAZ_c06960;PAZ_c06970;PAZ_c06980;PAZ_c06990";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"855386-855528";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"855603-857175";i:10;s:1:"+";i:11;s:10:"PAZ_c08370";i:12;s:0:"";i:13;s:10:"PAZ_c08370";i:14;s:11:"Single gene";i:15;s:7:"3671505";i:16;s:10:"PAZ_c08370";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"937770-937883";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"938755-939322";i:10;s:1:"+";i:11;s:5:"thiE2";i:12;s:0:"";i:13;s:10:"PAZ_c09230";i:14;s:6:"Operon";i:15;s:7:"1057808";i:16;s:69:"PAZ_c09220(thiM);PAZ_c09230(thiE2);PAZ_c09240(ldh2);PAZ_c09250(sfcA2)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1773332-1773399";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1772260-1773136";i:10;s:1:"-";i:11;s:10:"PAZ_c17320";i:12;s:0:"";i:13;s:10:"PAZ_c17320";i:14;s:6:"Operon";i:15;s:7:"1057967";i:16;s:21:"PAZ_c17310;PAZ_c17320";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1866424-1866558";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1865354-1866326";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:10:"PAZ_c18260";i:14;s:6:"Operon";i:15;s:7:"1057988";i:16;s:102:"PAZ_c18210(purH);PAZ_c18220(purN);PAZ_c18230(ribH);PAZ_c18240(ribBA);PAZ_c18250(ribE);PAZ_c18260(ribD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2014155-2014222";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2014417-2015293";i:10;s:1:"+";i:11;s:10:"PAZ_c19850";i:12;s:0:"";i:13;s:10:"PAZ_c19850";i:14;s:6:"Operon";i:15;s:7:"1058020";i:16;s:88:"PAZ_c19820(korA);PAZ_c19830(korB);PAZ_c19840;PAZ_c19850;PAZ_c19860;PAZ_c19870;PAZ_c19880";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2107068-2107135";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2107330-2108206";i:10;s:1:"+";i:11;s:10:"PAZ_c20720";i:12;s:0:"";i:13;s:10:"PAZ_c20720";i:14;s:6:"Operon";i:15;s:7:"1058037";i:16;s:32:"PAZ_c20720;PAZ_c20730;PAZ_c20740";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2228569-2228769";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2228880-2231451";i:10;s:1:"+";i:11;s:4:"nrdA";i:12;s:0:"";i:13;s:10:"PAZ_c21980";i:14;s:6:"Operon";i:15;s:7:"1058065";i:16;s:33:"PAZ_c21980(nrdA);PAZ_c21990(nrdB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_017534.1";i:2;s:28:"Propionibacterium acnes 266 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2251623-2251864";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2249204-2251547";i:10;s:1:"-";i:11;s:4:"nrdD";i:12;s:0:"";i:13;s:10:"PAZ_c22170";i:14;s:6:"Operon";i:15;s:7:"1058070";i:16;s:33:"PAZ_c22160(nrdG);PAZ_c22170(nrdD)";i:17;s:0:"";i:18;s:15:"View Structure ";}}