Genome: Pseudomonas putida BIRD-1 (NC_017530.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 639697-639838 (-)FMN638965-639616 (-)ribB

PPUBIRD1_0570Single gene

DOOR ID: 3665894		PPUBIRD1_0570 (ribB) View Structure
2 907108-907247 (-)yybP-ykoY906434-907019 (-)PPUBIRD1_0807

PPUBIRD1_0807Single gene

DOOR ID: 3665996		PPUBIRD1_0807 View Structure
3 2599457-2599674 (+)cobalamin2599695-2600841 (+)cobW

PPUBIRD1_2288Operon

DOOR ID: 1261217		PPUBIRD1_2288 (cobW),
PPUBIRD1_2289 (cobN),
PPUBIRD1_2290 (cobN_2),
PPUBIRD1_2291		 View Structure
4 2718181-2718404 (-)cobalamin2717899-2718088 (-)PPUBIRD1_2381

PPUBIRD1_2381Operon

DOOR ID: 1261232		PPUBIRD1_2378 (cobM),
PPUBIRD1_2379,
PPUBIRD1_2380,
PPUBIRD1_2381		 View Structure
5 2896732-2896846 (-)TPP2896005-2896653 (-)PPUBIRD1_2553

PPUBIRD1_2553Operon

DOOR ID: 1261265		PPUBIRD1_2552,
PPUBIRD1_2553		 View Structure
6 3649502-3649710 (+)cobalamin3649740-3651945 (+)PPUBIRD1_3267

PPUBIRD1_3267Single gene

DOOR ID: 3666985		PPUBIRD1_3267 View Structure
7 3653258-3653456 (+)cobalamin3653566-3654577 (+)PPUBIRD1_3269

PPUBIRD1_3269Operon

DOOR ID: 1261403		PPUBIRD1_3269,
PPUBIRD1_3270,
PPUBIRD1_3271		 View Structure
8 4392796-4392847 (+)mini-ykkC4392872-4393190 (+)PPUBIRD1_3916

PPUBIRD1_3916Single gene

DOOR ID: 3667276		PPUBIRD1_3916 View Structure
9 4422869-4423090 (-)cobalamin4422137-4422749 (-)cobO

PPUBIRD1_3945Operon

DOOR ID: 1261537		PPUBIRD1_3936,
PPUBIRD1_3937,
PPUBIRD1_3938 (cobT),
PPUBIRD1_3939 (cobU),
PPUBIRD1_3940 (cobQ),
PPUBIRD1_3941 (cobC),
PPUBIRD1_3942 (cobD),
PPUBIRD1_3943,
PPUBIRD1_3944 (cobB),
PPUBIRD1_3945 (cobO)		 View Structure
10 5255811-5255917 (-)TPP5253776-5255657 (-)thiC

PPUBIRD1_4709Single gene

DOOR ID: 3667577		PPUBIRD1_4709 (thiC) View Structure
11 5317355-5317451 (+)SAH5317471-5318881 (+)PPUBIRD1_4761

PPUBIRD1_4761Single gene

DOOR ID: 3667598		PPUBIRD1_4761 View Structure