About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
79242-79332
(-)
glycine
77656-78934 (-)
glyA
MTCTRI2_0072
Operon
DOOR ID:
1259900
MTCTRI2_0072
(glyA)
,
MTCTRI2_0071
(sdaA)
View Structure
2
309440-309613
(-)
cobalamin
307631-309302 (-)
PPE2
MTCTRI2_0261
Operon
DOOR ID:
1259937
MTCTRI2_0259
(cobU)
,
MTCTRI2_0260
(cobQ1)
,
MTCTRI2_0261
(PPE2)
View Structure
3
500767-500877
(+)
TPP
501886-502093 (+)
thiS
MTCTRI2_0419
Operon
DOOR ID:
1259970
MTCTRI2_0418
(thiO)
,
MTCTRI2_0419
(thiS)
,
MTCTRI2_0420
(thiG)
View Structure
4
509936-510046
(-)
TPP
507477-508275 (-)
thiD
MTCTRI2_0425
Operon
DOOR ID:
1259971
MTCTRI2_0424,
MTCTRI2_0425
(thiD)
,
MTCTRI2_0426
(thiC)
View Structure
5
965952-966174
(-)
ydaO-yuaA
964718-965942 (-)
rpfA
MTCTRI2_0890
Single gene
DOOR ID:
3660606
MTCTRI2_0890
(rpfA)
View Structure
6
1261841-1262059
(-)
cobalamin
1259428-1261708 (-)
metE
MTCTRI2_1164
Single gene
DOOR ID:
3660712
MTCTRI2_1164
(metE)
View Structure
7
1736006-1736175
(+)
ykoK
1736472-1736709 (+)
MTCTRI2_1578
MTCTRI2_1578
Single gene
DOOR ID:
3660865
MTCTRI2_1578
View Structure
8
2041321-2041495
(+)
ykoK
2041797-2042097 (+)
PE20
MTCTRI2_1838
Operon
DOOR ID:
1260293
MTCTRI2_1838
(PE20)
,
MTCTRI2_1839
View Structure
9
2069322-2069419
(+)
glycine
2069585-2072411 (+)
gcvB
MTCTRI2_1864
Operon
DOOR ID:
1260298
MTCTRI2_1862,
MTCTRI2_1863,
MTCTRI2_1864
(gcvB)
View Structure
10
3724433-3724552
(+)
SAM-IV
3724588-3725938 (+)
metC
MTCTRI2_3413
Operon
DOOR ID:
1260645
MTCTRI2_3413
(metC)
,
MTCTRI2_3414
(metX)
,
MTCTRI2_3415
View Structure
Genome:
Mycobacterium tuberculosis CTRI-2
(
NC_017524.1
);
Phylum:
Actinobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017524.1";i:2;s:34:"Mycobacterium tuberculosis CTRI-2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"79242-79332";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:11:"77656-78934";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:0:"";i:13;s:12:"MTCTRI2_0072";i:14;s:6:"Operon";i:15;s:7:"1259900";i:16;s:37:"MTCTRI2_0072(glyA);MTCTRI2_0071(sdaA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017524.1";i:2;s:34:"Mycobacterium tuberculosis CTRI-2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"309440-309613";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"307631-309302";i:10;s:1:"-";i:11;s:4:"PPE2";i:12;s:0:"";i:13;s:12:"MTCTRI2_0261";i:14;s:6:"Operon";i:15;s:7:"1259937";i:16;s:57:"MTCTRI2_0259(cobU);MTCTRI2_0260(cobQ1);MTCTRI2_0261(PPE2)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017524.1";i:2;s:34:"Mycobacterium tuberculosis CTRI-2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"500767-500877";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"501886-502093";i:10;s:1:"+";i:11;s:4:"thiS";i:12;s:0:"";i:13;s:12:"MTCTRI2_0419";i:14;s:6:"Operon";i:15;s:7:"1259970";i:16;s:56:"MTCTRI2_0418(thiO);MTCTRI2_0419(thiS);MTCTRI2_0420(thiG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017524.1";i:2;s:34:"Mycobacterium tuberculosis CTRI-2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"509936-510046";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"507477-508275";i:10;s:1:"-";i:11;s:4:"thiD";i:12;s:0:"";i:13;s:12:"MTCTRI2_0425";i:14;s:6:"Operon";i:15;s:7:"1259971";i:16;s:50:"MTCTRI2_0424;MTCTRI2_0425(thiD);MTCTRI2_0426(thiC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017524.1";i:2;s:34:"Mycobacterium tuberculosis CTRI-2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"965952-966174";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"964718-965942";i:10;s:1:"-";i:11;s:4:"rpfA";i:12;s:0:"";i:13;s:12:"MTCTRI2_0890";i:14;s:11:"Single gene";i:15;s:7:"3660606";i:16;s:18:"MTCTRI2_0890(rpfA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017524.1";i:2;s:34:"Mycobacterium tuberculosis CTRI-2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1261841-1262059";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1259428-1261708";i:10;s:1:"-";i:11;s:4:"metE";i:12;s:0:"";i:13;s:12:"MTCTRI2_1164";i:14;s:11:"Single gene";i:15;s:7:"3660712";i:16;s:18:"MTCTRI2_1164(metE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017524.1";i:2;s:34:"Mycobacterium tuberculosis CTRI-2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1736006-1736175";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1736472-1736709";i:10;s:1:"+";i:11;s:12:"MTCTRI2_1578";i:12;s:0:"";i:13;s:12:"MTCTRI2_1578";i:14;s:11:"Single gene";i:15;s:7:"3660865";i:16;s:12:"MTCTRI2_1578";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017524.1";i:2;s:34:"Mycobacterium tuberculosis CTRI-2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2041321-2041495";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2041797-2042097";i:10;s:1:"+";i:11;s:4:"PE20";i:12;s:0:"";i:13;s:12:"MTCTRI2_1838";i:14;s:6:"Operon";i:15;s:7:"1260293";i:16;s:31:"MTCTRI2_1838(PE20);MTCTRI2_1839";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017524.1";i:2;s:34:"Mycobacterium tuberculosis CTRI-2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2069322-2069419";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2069585-2072411";i:10;s:1:"+";i:11;s:4:"gcvB";i:12;s:0:"";i:13;s:12:"MTCTRI2_1864";i:14;s:6:"Operon";i:15;s:7:"1260298";i:16;s:44:"MTCTRI2_1862;MTCTRI2_1863;MTCTRI2_1864(gcvB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017524.1";i:2;s:34:"Mycobacterium tuberculosis CTRI-2 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3724433-3724552";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3724588-3725938";i:10;s:1:"+";i:11;s:4:"metC";i:12;s:0:"";i:13;s:12:"MTCTRI2_3413";i:14;s:6:"Operon";i:15;s:7:"1260645";i:16;s:50:"MTCTRI2_3413(metC);MTCTRI2_3414(metX);MTCTRI2_3415";i:17;s:0:"";i:18;s:15:"View Structure ";}}