About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
80276-80366
(-)
glycine
78690-79968 (-)
CCDC5079_0063
CCDC5079_0063
Operon
DOOR ID:
1259140
CCDC5079_0063,
CCDC5079_0062
View Structure
2
307318-307491
(-)
cobalamin
305509-307180 (-)
CCDC5079_0239
CCDC5079_0239
Operon
DOOR ID:
1259171
CCDC5079_0239,
CCDC5079_0238,
CCDC5079_0237
View Structure
3
498629-498739
(+)
TPP
499947-500706 (+)
CCDC5079_0390
CCDC5079_0390
Single gene
DOOR ID:
3658839
CCDC5079_0390
View Structure
4
507797-507907
(-)
TPP
505338-506166 (-)
CCDC5079_0395
CCDC5079_0395
Operon
DOOR ID:
1259204
CCDC5079_0396,
CCDC5079_0395,
CCDC5079_0394
View Structure
5
961757-961979
(-)
ydaO-yuaA
960523-961747 (-)
CCDC5079_0802
CCDC5079_0802
Single gene
DOOR ID:
3659016
CCDC5079_0802
View Structure
6
1257708-1257926
(-)
cobalamin
1255295-1257575 (-)
CCDC5079_1046
CCDC5079_1046
Single gene
DOOR ID:
3659133
CCDC5079_1046
View Structure
7
1734793-1734962
(+)
ykoK
1735802-1738928 (+)
CCDC5079_1432
CCDC5079_1432
Single gene
DOOR ID:
3659286
CCDC5079_1432
View Structure
8
2029224-2029398
(+)
ykoK
2030014-2031226 (+)
CCDC5079_1664
CCDC5079_1664
Single gene
DOOR ID:
3659380
CCDC5079_1664
View Structure
9
2057186-2057283
(+)
glycine
2057449-2060275 (+)
CCDC5079_1689
CCDC5079_1689
Single gene
DOOR ID:
3659395
CCDC5079_1689
View Structure
10
3708174-3708293
(+)
SAM-IV
3708329-3709679 (+)
CCDC5079_3089
CCDC5079_3089
Operon
DOOR ID:
1259771
CCDC5079_3089,
CCDC5079_3090,
CCDC5079_3091
View Structure
Genome:
Mycobacterium tuberculosis CCDC5079
(
NC_017523.1
);
Phylum:
Actinobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017523.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5079 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"80276-80366";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:11:"78690-79968";i:10;s:1:"-";i:11;s:13:"CCDC5079_0063";i:12;s:0:"";i:13;s:13:"CCDC5079_0063";i:14;s:6:"Operon";i:15;s:7:"1259140";i:16;s:27:"CCDC5079_0063;CCDC5079_0062";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017523.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5079 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"307318-307491";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"305509-307180";i:10;s:1:"-";i:11;s:13:"CCDC5079_0239";i:12;s:0:"";i:13;s:13:"CCDC5079_0239";i:14;s:6:"Operon";i:15;s:7:"1259171";i:16;s:41:"CCDC5079_0239;CCDC5079_0238;CCDC5079_0237";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017523.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5079 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"498629-498739";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"499947-500706";i:10;s:1:"+";i:11;s:13:"CCDC5079_0390";i:12;s:0:"";i:13;s:13:"CCDC5079_0390";i:14;s:11:"Single gene";i:15;s:7:"3658839";i:16;s:13:"CCDC5079_0390";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017523.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5079 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"507797-507907";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"505338-506166";i:10;s:1:"-";i:11;s:13:"CCDC5079_0395";i:12;s:0:"";i:13;s:13:"CCDC5079_0395";i:14;s:6:"Operon";i:15;s:7:"1259204";i:16;s:41:"CCDC5079_0396;CCDC5079_0395;CCDC5079_0394";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017523.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5079 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"961757-961979";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"960523-961747";i:10;s:1:"-";i:11;s:13:"CCDC5079_0802";i:12;s:0:"";i:13;s:13:"CCDC5079_0802";i:14;s:11:"Single gene";i:15;s:7:"3659016";i:16;s:13:"CCDC5079_0802";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017523.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5079 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1257708-1257926";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1255295-1257575";i:10;s:1:"-";i:11;s:13:"CCDC5079_1046";i:12;s:0:"";i:13;s:13:"CCDC5079_1046";i:14;s:11:"Single gene";i:15;s:7:"3659133";i:16;s:13:"CCDC5079_1046";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017523.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5079 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1734793-1734962";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1735802-1738928";i:10;s:1:"+";i:11;s:13:"CCDC5079_1432";i:12;s:0:"";i:13;s:13:"CCDC5079_1432";i:14;s:11:"Single gene";i:15;s:7:"3659286";i:16;s:13:"CCDC5079_1432";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017523.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5079 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2029224-2029398";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2030014-2031226";i:10;s:1:"+";i:11;s:13:"CCDC5079_1664";i:12;s:0:"";i:13;s:13:"CCDC5079_1664";i:14;s:11:"Single gene";i:15;s:7:"3659380";i:16;s:13:"CCDC5079_1664";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017523.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5079 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2057186-2057283";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2057449-2060275";i:10;s:1:"+";i:11;s:13:"CCDC5079_1689";i:12;s:0:"";i:13;s:13:"CCDC5079_1689";i:14;s:11:"Single gene";i:15;s:7:"3659395";i:16;s:13:"CCDC5079_1689";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017523.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5079 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3708174-3708293";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3708329-3709679";i:10;s:1:"+";i:11;s:13:"CCDC5079_3089";i:12;s:0:"";i:13;s:13:"CCDC5079_3089";i:14;s:6:"Operon";i:15;s:7:"1259771";i:16;s:41:"CCDC5079_3089;CCDC5079_3090;CCDC5079_3091";i:17;s:0:"";i:18;s:15:"View Structure ";}}