About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
80755-80845
(-)
glycine
79169-80447 (-)
CCDC5180_0064
CCDC5180_0064
Operon
DOOR ID:
1258396
CCDC5180_0064,
CCDC5180_0063
View Structure
2
307954-308127
(-)
cobalamin
307090-307816 (-)
CCDC5180_0238
CCDC5180_0238
Single gene
DOOR ID:
3657159
CCDC5180_0238
View Structure
3
496859-496969
(+)
TPP
498177-498936 (+)
CCDC5180_0385
CCDC5180_0385
Single gene
DOOR ID:
3657230
CCDC5180_0385
View Structure
4
506027-506137
(-)
TPP
503568-504396 (-)
CCDC5180_0390
CCDC5180_0390
Operon
DOOR ID:
1258457
CCDC5180_0391,
CCDC5180_0390,
CCDC5180_0389
View Structure
5
961686-961908
(-)
ydaO-yuaA
960452-961676 (-)
CCDC5180_0794
CCDC5180_0794
Single gene
DOOR ID:
3657402
CCDC5180_0794
View Structure
6
1256278-1256496
(-)
cobalamin
1253865-1256250 (-)
CCDC5180_1038
CCDC5180_1038
Single gene
DOOR ID:
3657517
CCDC5180_1038
View Structure
7
1734624-1734793
(+)
ykoK
1735633-1738759 (+)
CCDC5180_1420
CCDC5180_1420
Single gene
DOOR ID:
3657675
CCDC5180_1420
View Structure
8
2028376-2028550
(+)
ykoK
2029166-2030378 (+)
CCDC5180_1644
CCDC5180_1644
Single gene
DOOR ID:
3657764
CCDC5180_1644
View Structure
9
2056347-2056444
(+)
glycine
2056610-2057402 (+)
CCDC5180_1668
CCDC5180_1668
Operon
DOOR ID:
1258732
CCDC5180_1669,
CCDC5180_1668
View Structure
10
3717364-3717483
(+)
SAM-IV
3717519-3718869 (+)
CCDC5180_3048
CCDC5180_3048
Operon
DOOR ID:
1259017
CCDC5180_3048,
CCDC5180_3049,
CCDC5180_3050
View Structure
Genome:
Mycobacterium tuberculosis CCDC5180
(
NC_017522.1
);
Phylum:
Actinobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017522.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5180 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"80755-80845";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:11:"79169-80447";i:10;s:1:"-";i:11;s:13:"CCDC5180_0064";i:12;s:0:"";i:13;s:13:"CCDC5180_0064";i:14;s:6:"Operon";i:15;s:7:"1258396";i:16;s:27:"CCDC5180_0064;CCDC5180_0063";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017522.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5180 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"307954-308127";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"307090-307816";i:10;s:1:"-";i:11;s:13:"CCDC5180_0238";i:12;s:0:"";i:13;s:13:"CCDC5180_0238";i:14;s:11:"Single gene";i:15;s:7:"3657159";i:16;s:13:"CCDC5180_0238";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017522.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5180 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"496859-496969";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"498177-498936";i:10;s:1:"+";i:11;s:13:"CCDC5180_0385";i:12;s:0:"";i:13;s:13:"CCDC5180_0385";i:14;s:11:"Single gene";i:15;s:7:"3657230";i:16;s:13:"CCDC5180_0385";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017522.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5180 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"506027-506137";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"503568-504396";i:10;s:1:"-";i:11;s:13:"CCDC5180_0390";i:12;s:0:"";i:13;s:13:"CCDC5180_0390";i:14;s:6:"Operon";i:15;s:7:"1258457";i:16;s:41:"CCDC5180_0391;CCDC5180_0390;CCDC5180_0389";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017522.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5180 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"961686-961908";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"960452-961676";i:10;s:1:"-";i:11;s:13:"CCDC5180_0794";i:12;s:0:"";i:13;s:13:"CCDC5180_0794";i:14;s:11:"Single gene";i:15;s:7:"3657402";i:16;s:13:"CCDC5180_0794";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017522.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5180 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1256278-1256496";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1253865-1256250";i:10;s:1:"-";i:11;s:13:"CCDC5180_1038";i:12;s:0:"";i:13;s:13:"CCDC5180_1038";i:14;s:11:"Single gene";i:15;s:7:"3657517";i:16;s:13:"CCDC5180_1038";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017522.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5180 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1734624-1734793";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1735633-1738759";i:10;s:1:"+";i:11;s:13:"CCDC5180_1420";i:12;s:0:"";i:13;s:13:"CCDC5180_1420";i:14;s:11:"Single gene";i:15;s:7:"3657675";i:16;s:13:"CCDC5180_1420";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017522.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5180 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2028376-2028550";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2029166-2030378";i:10;s:1:"+";i:11;s:13:"CCDC5180_1644";i:12;s:0:"";i:13;s:13:"CCDC5180_1644";i:14;s:11:"Single gene";i:15;s:7:"3657764";i:16;s:13:"CCDC5180_1644";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017522.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5180 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2056347-2056444";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2056610-2057402";i:10;s:1:"+";i:11;s:13:"CCDC5180_1668";i:12;s:0:"";i:13;s:13:"CCDC5180_1668";i:14;s:6:"Operon";i:15;s:7:"1258732";i:16;s:27:"CCDC5180_1669;CCDC5180_1668";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017522.1";i:2;s:36:"Mycobacterium tuberculosis CCDC5180 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3717364-3717483";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3717519-3718869";i:10;s:1:"+";i:11;s:13:"CCDC5180_3048";i:12;s:0:"";i:13;s:13:"CCDC5180_3048";i:14;s:6:"Operon";i:15;s:7:"1259017";i:16;s:41:"CCDC5180_3048;CCDC5180_3049;CCDC5180_3050";i:17;s:0:"";i:18;s:15:"View Structure ";}}