RiboswitchDB

Genome: Neisseria meningitidis G2136 (NC_017513.1); Phylum: Betaproteobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

489403-489448 (+)

PreQ1

489450-490110 (+)

NMBG2136_0460

Operon

DOOR ID: 1054002

NMBG2136_0460,
NMBG2136_0461,
NMBG2136_0462 (queD)

2

545199-545296 (+)

glycine

545506-546607 (+)

gcvT

Single gene

DOOR ID: 3650813

NMBG2136_0510 (gcvT)

3

1896899-1896943 (+)

PreQ1

1896946-1897420 (+)

queF

Single gene

DOOR ID: 3651391

NMBG2136_1781 (queF)

4

2082248-2082347 (-)

TPP

2080255-2082157 (-)

thiC

Single gene

DOOR ID: 3651462

NMBG2136_1941 (thiC)

5

2109714-2109817 (+)

TPP

2109883-2111107 (+)

NMBG2136_1968

Operon

DOOR ID: 1054286

NMBG2136_1968,
NMBG2136_1969,
NMBG2136_1970

a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017513.1";i:2;s:29:"Neisseria meningitidis G2136 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"489403-489448";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"489450-490110";i:10;s:1:"+";i:11;s:13:"NMBG2136_0460";i:12;s:0:"";i:13;s:13:"NMBG2136_0460";i:14;s:6:"Operon";i:15;s:7:"1054002";i:16;s:47:"NMBG2136_0460;NMBG2136_0461;NMBG2136_0462(queD)";i:17;s:0:"";i:18;s:15:"View Structure
";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017513.1";i:2;s:29:"Neisseria meningitidis G2136 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"545199-545296";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"545506-546607";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:13:"NMBG2136_0510";i:14;s:11:"Single gene";i:15;s:7:"3650813";i:16;s:19:"NMBG2136_0510(gcvT)";i:17;s:0:"";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017513.1";i:2;s:29:"Neisseria meningitidis G2136 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1896899-1896943";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1896946-1897420";i:10;s:1:"+";i:11;s:4:"queF";i:12;s:0:"";i:13;s:13:"NMBG2136_1781";i:14;s:11:"Single gene";i:15;s:7:"3651391";i:16;s:19:"NMBG2136_1781(queF)";i:17;s:0:"";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017513.1";i:2;s:29:"Neisseria meningitidis G2136 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2082248-2082347";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2080255-2082157";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:0:"";i:13;s:13:"NMBG2136_1941";i:14;s:11:"Single gene";i:15;s:7:"3651462";i:16;s:19:"NMBG2136_1941(thiC)";i:17;s:0:"";i:18;s:15:"View Structure
";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017513.1";i:2;s:29:"Neisseria meningitidis G2136 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2109714-2109817";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2109883-2111107";i:10;s:1:"+";i:11;s:13:"NMBG2136_1968";i:12;s:0:"";i:13;s:13:"NMBG2136_1968";i:14;s:6:"Operon";i:15;s:7:"1054286";i:16;s:41:"NMBG2136_1968;NMBG2136_1969;NMBG2136_1970";i:17;s:0:"";i:18;s:15:"View Structure
";}}