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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
457362-457484
(+)
TPP
457554-459450 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
HP15_453
Operon
DOOR ID:
1257596
HP15_455,
HP15_454,
HP15_453
(thiC)
View Structure
2
1691029-1691121
(+)
glycine
1691284-1692505 (+)
dadA3
D-amino acid dehydrogenase 2 small subunit
HP15_1596
Single gene
DOOR ID:
3647766
HP15_1596
(dadA3)
View Structure
3
2000844-2000918
(+)
c-di-GMP-I
2000995-2001745 (+)
HP15_1893
Protein containing PEP-CTERM bacterial domain
HP15_1893
single gene
DOOR ID:
3647870
HP15_1893
View Structure
4
3298542-3298647
(+)
ykkC-yxkD
3298651-3298786 (-)
HP15_3148
HP15_3148
Single gene
DOOR ID:
3648295
HP15_3148
View Structure
5
3311458-3311566
(+)
ykkC-yxkD
3311638-3312448 (+)
HP15_3158
Binding-protein-dependent transport systems inner membrane component
HP15_3158
Operon
DOOR ID:
1258166
HP15_3159,
HP15_3158
View Structure
6
3844945-3845153
(-)
cobalamin
3842050-3844816 (-)
HP15_3649
Ribonucleoside-diphosphate reductase
HP15_3649
Operon
DOOR ID:
1258273
HP15_3648,
HP15_3649
View Structure
7
4049438-4049625
(+)
yybP-ykoY
4049629-4050199 (+)
HP15_3823
HP15_3823
Operon
DOOR ID:
1258308
HP15_3823,
HP15_3824
View Structure
8
4183219-4183442
(+)
cobalamin
4183576-4185415 (+)
HP15_3953
Outer membrane receptor for transport of vitamin B
HP15_3953
Operon
DOOR ID:
1258341
HP15_3952,
HP15_3953,
HP15_3954,
HP15_3955,
HP15_3956,
HP15_3957,
HP15_3958
View Structure
Genome:
Marinobacter adhaerens HP15
(
NC_017506.1
);
Phylum:
Gammaproteobacteria
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