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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
354472-354571
(-)
TPP
353876-354425 (-)
llh_1860
Substrate-specific component ThiT of thiamin ECF transporter
llh_1860
Operon
DOOR ID:
1051051
llh_1855,
llh_1860
View Structure
2
834774-834949
(+)
lysine
835049-835943 (+)
llh_4395
4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase)
llh_4395
Single gene
DOOR ID:
3645041
llh_4395
View Structure
3
1117260-1117334
(+)
fluoride
1117701-1118832 (+)
llh_6025
Chloride channel protein
llh_6025
Single gene
DOOR ID:
3645099
llh_6025
View Structure
4
1181316-1181413
(+)
purine
1181522-1182116 (+)
llh_6365
Xanthine phosphoribosyltransferase (XPRTase) (2)
llh_6365
Operon
DOOR ID:
1051249
llh_6365,
llh_6370
View Structure
5
1288611-1288771
(-)
ykoK
1285626-1288359 (-)
llh_6930
Mg(2+) transport ATPase; P-type
llh_6930
Operon
DOOR ID:
1051270
llh_6915,
llh_6920,
llh_6925,
llh_6930
View Structure
6
1295741-1295841
(-)
TPP
1294907-1295660 (-)
llh_6965
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
llh_6965
Operon
DOOR ID:
1051272
llh_6955,
llh_6960,
llh_6965
View Structure
7
1312643-1312779
(-)
FMN
1311907-1312528 (-)
llh_7055
Riboflavin transporter
llh_7055
Single gene
DOOR ID:
3645130
llh_7055
View Structure
8
1422684-1422800
(-)
FMN
1422047-1422500 (-)
llh_7630
Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase (6)
llh_7630
Operon
DOOR ID:
1051302
llh_7610,
llh_7615,
llh_7620,
llh_7625,
llh_7630
View Structure
9
1655775-1655881
(-)
preQ1-II
1654532-1655165 (-)
llh_8815
Rrf2-linked NADH-flavin reductase
llh_8815
Operon
DOOR ID:
1051357
llh_8815,
llh_8820,
llh_8825
View Structure
10
2347260-2347441
(+)
lysine
2347599-2349066 (+)
llh_12715
Lysine-specific permease
llh_12715
Single gene
DOOR ID:
3645322
llh_12715
View Structure
Genome:
Lactococcus lactis subsp. cremoris A76
(
NC_017492.1
);
Phylum:
Firmicutes
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lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017492.1";i:2;s:39:"Lactococcus lactis subsp. cremoris A76 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1117260-1117334";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1117701-1118832";i:10;s:1:"+";i:11;s:8:"llh_6025";i:12;s:24:"Chloride channel protein";i:13;s:8:"llh_6025";i:14;s:11:"Single gene";i:15;s:7:"3645099";i:16;s:8:"llh_6025";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017492.1";i:2;s:39:"Lactococcus lactis subsp. cremoris A76 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1181316-1181413";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1181522-1182116";i:10;s:1:"+";i:11;s:8:"llh_6365";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:8:"llh_6365";i:14;s:6:"Operon";i:15;s:7:"1051249";i:16;s:17:"llh_6365;llh_6370";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017492.1";i:2;s:39:"Lactococcus lactis subsp. cremoris A76 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1288611-1288771";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1285626-1288359";i:10;s:1:"-";i:11;s:8:"llh_6930";i:12;s:32:"Mg(2+) transport ATPase; P-type ";i:13;s:8:"llh_6930";i:14;s:6:"Operon";i:15;s:7:"1051270";i:16;s:35:"llh_6915;llh_6920;llh_6925;llh_6930";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017492.1";i:2;s:39:"Lactococcus lactis subsp. cremoris A76 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1295741-1295841";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1294907-1295660";i:10;s:1:"-";i:11;s:8:"llh_6965";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:8:"llh_6965";i:14;s:6:"Operon";i:15;s:7:"1051272";i:16;s:26:"llh_6955;llh_6960;llh_6965";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017492.1";i:2;s:39:"Lactococcus lactis subsp. cremoris A76 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1312643-1312779";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1311907-1312528";i:10;s:1:"-";i:11;s:8:"llh_7055";i:12;s:22:"Riboflavin transporter";i:13;s:8:"llh_7055";i:14;s:11:"Single gene";i:15;s:7:"3645130";i:16;s:8:"llh_7055";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017492.1";i:2;s:39:"Lactococcus lactis subsp. cremoris A76 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1422684-1422800";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1422047-1422500";i:10;s:1:"-";i:11;s:8:"llh_7630";i:12;s:109:"Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase (6)";i:13;s:8:"llh_7630";i:14;s:6:"Operon";i:15;s:7:"1051302";i:16;s:44:"llh_7610;llh_7615;llh_7620;llh_7625;llh_7630";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017492.1";i:2;s:39:"Lactococcus lactis subsp. cremoris A76 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1655775-1655881";i:6;s:1:"-";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:15:"1654532-1655165";i:10;s:1:"-";i:11;s:8:"llh_8815";i:12;s:33:"Rrf2-linked NADH-flavin reductase";i:13;s:8:"llh_8815";i:14;s:6:"Operon";i:15;s:7:"1051357";i:16;s:26:"llh_8815;llh_8820;llh_8825";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017492.1";i:2;s:39:"Lactococcus lactis subsp. cremoris A76 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2347260-2347441";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2347599-2349066";i:10;s:1:"+";i:11;s:9:"llh_12715";i:12;s:24:"Lysine-specific permease";i:13;s:9:"llh_12715";i:14;s:11:"Single gene";i:15;s:7:"3645322";i:16;s:9:"llh_12715";i:17;s:0:"";i:18;s:15:"View Structure ";}}
