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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
114758-114937
(-)
lysine
113313-114657 (-)
lysA
LRHK_110
Operon
DOOR ID:
1050368
LRHK_108,
LRHK_109
(dapD)
,
LRHK_110
(lysA)
View Structure
2
357474-357563
(+)
TPP
357763-358330 (+)
LRHK_362
LRHK_362
Operon
DOOR ID:
1050420
LRHK_362,
LRHK_364
(cbiO)
,
LRHK_365
View Structure
3
827582-827669
(+)
SMK_box
829380-830874 (+)
LRHK_868
LRHK_868
Single gene
DOOR ID:
3644010
LRHK_868
View Structure
4
1248217-1248380
(+)
ykoK
1248593-1249409 (+)
LRHK_1309
LRHK_1309
Single gene
DOOR ID:
3644166
LRHK_1309
View Structure
5
1739154-1739251
(-)
TPP
1738506-1739112 (-)
thiT
LRHK_1791
Single gene
DOOR ID:
3644286
LRHK_1791
(thiT)
View Structure
6
1829974-1830149
(-)
lysine
1829594-1829912 (+)
LRHK_1878
LRHK_1878
Single gene
DOOR ID:
3644326
LRHK_1878
View Structure
7
2005890-2005996
(-)
preQ1-II
2005389-2005890 (-)
queT
LRHK_2052
Single gene
DOOR ID:
3644410
LRHK_2052
(queT)
View Structure
8
2203283-2203377
(-)
THF
2202726-2203245 (-)
folT
LRHK_2251
Single gene
DOOR ID:
3644488
LRHK_2251
(folT)
View Structure
9
2391711-2391765
(-)
fluoride
2391231-2391642 (-)
LRHK_2444
LRHK_2444
Operon
DOOR ID:
1050854
LRHK_2443,
LRHK_2444
View Structure
10
2872766-2872939
(+)
lysine
2873045-2874644 (+)
LRHK_2951
LRHK_2951
Operon
DOOR ID:
1050957
LRHK_2951,
LRHK_2952
View Structure
Genome:
Lactobacillus rhamnosus ATCC 8530
(
NC_017491.1
);
Phylum:
Firmicutes
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