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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
118962-119141
(-)
lysine
117517-118861 (-)
LRHM_0112
LRHM_0112
Operon
DOOR ID:
1049111
LRHM_0110,
LRHM_0111,
LRHM_0112
View Structure
2
370695-370784
(+)
TPP
370984-371551 (+)
LRHM_0351
LRHM_0351
Operon
DOOR ID:
1049163
LRHM_0351,
LRHM_0352,
LRHM_0353,
LRHM_0354,
LRHM_0355,
LRHM_0356,
LRHM_0357,
LRHM_0358
View Structure
3
847164-847251
(+)
SMK_box
848555-850049 (+)
LRHM_0801
LRHM_0801
Operon
DOOR ID:
1049264
LRHM_0800,
LRHM_0801
View Structure
4
1312002-1312165
(+)
ykoK
1312378-1313194 (+)
LRHM_1265
LRHM_1265
Single gene
DOOR ID:
3641475
LRHM_1265
View Structure
5
1381970-1382091
(+)
FMN
1382189-1382768 (+)
LRHM_1327
LRHM_1327
Single gene
DOOR ID:
3641485
LRHM_1327
View Structure
6
1841416-1841513
(-)
TPP
1840768-1841374 (-)
LRHM_1750
LRHM_1750
Single gene
DOOR ID:
3641550
LRHM_1750
View Structure
7
1933145-1933320
(-)
lysine
1931113-1932577 (-)
LRHM_1820
LRHM_1820
Single gene
DOOR ID:
3641574
LRHM_1820
View Structure
8
2105213-2105337
(-)
preQ1-II
2104712-2105213 (-)
LRHM_1978
LRHM_1978
Operon
DOOR ID:
1049535
LRHM_1978,
LRHM_1979,
LRHM_1980
View Structure
9
2317180-2317274
(-)
THF
2316623-2317142 (-)
LRHM_2167
LRHM_2167
Single gene
DOOR ID:
3641673
LRHM_2167
View Structure
10
2497535-2497589
(-)
fluoride
2497055-2497466 (-)
LRHM_2343
LRHM_2343
Operon
DOOR ID:
1049619
LRHM_2342,
LRHM_2343
View Structure
11
2905814-2905987
(+)
lysine
2906084-2907692 (+)
LRHM_2740
LRHM_2740
Operon
DOOR ID:
1049701
LRHM_2739,
LRHM_2740,
LRHM_2741
View Structure
Genome:
Lactobacillus rhamnosus ATCC 53103
(
NC_017482.1
);
Phylum:
Firmicutes
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