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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
102493-102583
(-)
TPP
101879-102443 (-)
LJP_0081c
LJP_0081c
Operon
DOOR ID:
1360746
LJP_0081c,
LJP_0080c,
LJP_0079c
View Structure
2
115502-115675
(-)
lysine
113773-115387 (-)
LJP_0094c
ABC transporter permease component
LJP_0094c
Operon
DOOR ID:
1360750
LJP_0094c,
LJP_0093c
View Structure
3
238706-238878
(+)
ykoK
238947-239979 (+)
LJP_0206
Magnesium-importing ATPase
LJP_0206
Operon
DOOR ID:
1360776
LJP_0210,
LJP_0209,
LJP_0208,
LJP_0207,
LJP_0206
View Structure
4
269832-269930
(-)
purine
269182-269761 (-)
LJP_0231c
Xanthine phosphoribosyltransferase (XPRTase) (2)
LJP_0231c
Operon
DOOR ID:
1360781
LJP_0231c,
LJP_0230c
View Structure
5
552434-552504
(+)
SMK_box
553699-555157 (+)
LJP_0496
Major facilitator superfamily permease
LJP_0496
Operon
DOOR ID:
1360828
LJP_0496,
LJP_0495
View Structure
6
987544-987606
(+)
fluoride
987681-988968 (+)
LJP_0920
Enolase (1) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase)
LJP_0920
Single gene
DOOR ID:
3640105
LJP_0920
View Structure
7
1084185-1084352
(-)
ykoK
1081429-1084168 (-)
LJP_1004c
Mg(2+) transport ATPase; P-type 2
LJP_1004c
Single gene
DOOR ID:
3640132
LJP_1004c
View Structure
8
1109411-1109592
(-)
lysine
1108015-1109320 (-)
LJP_1026c
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
LJP_1026c
Operon
DOOR ID:
1360928
LJP_1020c,
LJP_1021c,
LJP_1022c,
LJP_1023c,
LJP_1024c,
LJP_1025c,
LJP_1026c
View Structure
9
1164958-1165069
(-)
FMN
1164281-1164875 (-)
LJP_1076c
Riboflavin transporter
LJP_1076c
Single gene
DOOR ID:
3640161
LJP_1076c
View Structure
10
1351151-1351213
(-)
fluoride
1350246-1351062 (-)
LJP_1257c
HAD superfamily hydrolase
LJP_1257c
Operon
DOOR ID:
1360969
LJP_1255c,
LJP_1256c,
LJP_1257c
View Structure
11
1938294-1938391
(+)
purine
1938472-1939786 (+)
LJP_1771
Transcriptional regulator; xre family
LJP_1771
Single gene
DOOR ID:
3640381
LJP_1771
View Structure
Genome:
Lactobacillus johnsonii DPC 6026
(
NC_017477.1
);
Phylum:
Firmicutes
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xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017477.1";i:2;s:33:"Lactobacillus johnsonii DPC 6026 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"552434-552504";i:6;s:1:"+";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:13:"553699-555157";i:10;s:1:"+";i:11;s:8:"LJP_0496";i:12;s:38:"Major facilitator superfamily permease";i:13;s:8:"LJP_0496";i:14;s:6:"Operon";i:15;s:7:"1360828";i:16;s:17:"LJP_0496;LJP_0495";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017477.1";i:2;s:33:"Lactobacillus johnsonii DPC 6026 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"987544-987606";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"987681-988968";i:10;s:1:"+";i:11;s:8:"LJP_0920";i:12;s:80:"Enolase (1) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase)";i:13;s:8:"LJP_0920";i:14;s:11:"Single gene";i:15;s:7:"3640105";i:16;s:8:"LJP_0920";i:17;s:31:"glycolytic process [GO:0006096]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017477.1";i:2;s:33:"Lactobacillus johnsonii DPC 6026 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1084185-1084352";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1081429-1084168";i:10;s:1:"-";i:11;s:9:"LJP_1004c";i:12;s:33:"Mg(2+) transport ATPase; P-type 2";i:13;s:9:"LJP_1004c";i:14;s:11:"Single gene";i:15;s:7:"3640132";i:16;s:9:"LJP_1004c";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017477.1";i:2;s:33:"Lactobacillus johnsonii DPC 6026 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1109411-1109592";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1108015-1109320";i:10;s:1:"-";i:11;s:9:"LJP_1026c";i:12;s:61:"Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)";i:13;s:9:"LJP_1026c";i:14;s:6:"Operon";i:15;s:7:"1360928";i:16;s:69:"LJP_1020c;LJP_1021c;LJP_1022c;LJP_1023c;LJP_1024c;LJP_1025c;LJP_1026c";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017477.1";i:2;s:33:"Lactobacillus johnsonii DPC 6026 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1164958-1165069";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1164281-1164875";i:10;s:1:"-";i:11;s:9:"LJP_1076c";i:12;s:22:"Riboflavin transporter";i:13;s:9:"LJP_1076c";i:14;s:11:"Single gene";i:15;s:7:"3640161";i:16;s:9:"LJP_1076c";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017477.1";i:2;s:33:"Lactobacillus johnsonii DPC 6026 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1351151-1351213";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1350246-1351062";i:10;s:1:"-";i:11;s:9:"LJP_1257c";i:12;s:25:"HAD superfamily hydrolase";i:13;s:9:"LJP_1257c";i:14;s:6:"Operon";i:15;s:7:"1360969";i:16;s:29:"LJP_1255c;LJP_1256c;LJP_1257c";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017477.1";i:2;s:33:"Lactobacillus johnsonii DPC 6026 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1938294-1938391";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1938472-1939786";i:10;s:1:"+";i:11;s:8:"LJP_1771";i:12;s:37:"Transcriptional regulator; xre family";i:13;s:8:"LJP_1771";i:14;s:11:"Single gene";i:15;s:7:"3640381";i:16;s:8:"LJP_1771";i:17;s:0:"";i:18;s:15:"View Structure ";}}
