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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
96948-97127
(-)
lysine
95502-96849 (-)
lysA
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
LCBD_0099
Operon
DOOR ID:
1048301
LCBD_0097
(ama)
,
LCBD_0098
(dapD)
,
LCBD_0099
(lysA)
View Structure
2
313580-313669
(+)
TPP
313825-314392 (+)
LCBD_0311
Putative membrane protein
LCBD_0311
Operon
DOOR ID:
1048343
LCBD_0311,
LCBD_0312,
LCBD_0313
View Structure
3
906385-906473
(+)
SMK_box
907768-909262 (+)
LCBD_0925
Transporter; major facilitator family protein
LCBD_0925
Single gene
DOOR ID:
3638863
LCBD_0925
View Structure
4
1452263-1452426
(+)
ykoK
1452643-1453459 (+)
LCBD_1512
LCBD_1512
Single gene
DOOR ID:
3639048
LCBD_1512
View Structure
5
1519881-1519999
(+)
FMN
1520095-1520674 (+)
LCBD_1572
Riboflavin transporter
LCBD_1572
Single gene
DOOR ID:
3639068
LCBD_1572
View Structure
6
1906348-1906445
(-)
TPP
1905699-1906305 (-)
LCBD_1954
Probable proton-coupled thiamine transporter YuaJ
LCBD_1954
Single gene
DOOR ID:
3639170
LCBD_1954
View Structure
7
1990644-1990819
(-)
lysine
1988930-1990385 (-)
LCBD_2031
Amino acid permease-associated region
LCBD_2031
Single gene
DOOR ID:
3639213
LCBD_2031
View Structure
8
2165619-2165717
(-)
preQ1-II
2164988-2165108 (-)
LCBD_2212
LCBD_2212
Operon
DOOR ID:
1048742
LCBD_2212,
LCBD_2213
(queT)
View Structure
9
2380556-2380650
(-)
THF
2380000-2380519 (-)
LCBD_2431
LCBD_2431
Single gene
DOOR ID:
3639397
LCBD_2431
View Structure
10
2561710-2561764
(-)
fluoride
2561145-2561556 (-)
crcB1
Putative fluoride ion transporter CrcB
LCBD_2627
Operon
DOOR ID:
1048830
LCBD_2626,
LCBD_2627
(crcB1)
View Structure
11
2562485-2562549
(+)
fluoride
2562607-2562868 (+)
LCBD_2629
Enolase
LCBD_2629
Single gene
DOOR ID:
3639485
LCBD_2629
View Structure
12
2985188-2985360
(+)
lysine
2985463-2987071 (+)
LCBD_3061
Amino acid ABC superfamily ATP binding cassette transporter; membrane protein
LCBD_3061
Operon
DOOR ID:
1048924
LCBD_3061,
LCBD_3062
View Structure
Genome:
Lactobacillus casei BD-II
(
NC_017474.1
);
Phylum:
Firmicutes
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major facilitator family protein";i:13;s:9:"LCBD_0925";i:14;s:11:"Single gene";i:15;s:7:"3638863";i:16;s:9:"LCBD_0925";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017474.1";i:2;s:26:"Lactobacillus casei BD-II ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1452263-1452426";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1452643-1453459";i:10;s:1:"+";i:11;s:9:"LCBD_1512";i:12;s:0:"";i:13;s:9:"LCBD_1512";i:14;s:11:"Single gene";i:15;s:7:"3639048";i:16;s:9:"LCBD_1512";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017474.1";i:2;s:26:"Lactobacillus casei BD-II ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1519881-1519999";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1520095-1520674";i:10;s:1:"+";i:11;s:9:"LCBD_1572";i:12;s:22:"Riboflavin transporter";i:13;s:9:"LCBD_1572";i:14;s:11:"Single gene";i:15;s:7:"3639068";i:16;s:9:"LCBD_1572";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017474.1";i:2;s:26:"Lactobacillus casei BD-II ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1906348-1906445";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1905699-1906305";i:10;s:1:"-";i:11;s:9:"LCBD_1954";i:12;s:49:"Probable proton-coupled thiamine transporter YuaJ";i:13;s:9:"LCBD_1954";i:14;s:11:"Single gene";i:15;s:7:"3639170";i:16;s:9:"LCBD_1954";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017474.1";i:2;s:26:"Lactobacillus casei BD-II ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1990644-1990819";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1988930-1990385";i:10;s:1:"-";i:11;s:9:"LCBD_2031";i:12;s:37:"Amino acid permease-associated region";i:13;s:9:"LCBD_2031";i:14;s:11:"Single gene";i:15;s:7:"3639213";i:16;s:9:"LCBD_2031";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017474.1";i:2;s:26:"Lactobacillus casei BD-II ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2165619-2165717";i:6;s:1:"-";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:15:"2164988-2165108";i:10;s:1:"-";i:11;s:9:"LCBD_2212";i:12;s:0:"";i:13;s:9:"LCBD_2212";i:14;s:6:"Operon";i:15;s:7:"1048742";i:16;s:25:"LCBD_2212;LCBD_2213(queT)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017474.1";i:2;s:26:"Lactobacillus casei BD-II ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2380556-2380650";i:6;s:1:"-";i:7;s:3:"THF";i:8;s:0:"";i:9;s:15:"2380000-2380519";i:10;s:1:"-";i:11;s:9:"LCBD_2431";i:12;s:0:"";i:13;s:9:"LCBD_2431";i:14;s:11:"Single gene";i:15;s:7:"3639397";i:16;s:9:"LCBD_2431";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017474.1";i:2;s:26:"Lactobacillus casei BD-II ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2561710-2561764";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2561145-2561556";i:10;s:1:"-";i:11;s:5:"crcB1";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"LCBD_2627";i:14;s:6:"Operon";i:15;s:7:"1048830";i:16;s:26:"LCBD_2626;LCBD_2627(crcB1)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017474.1";i:2;s:26:"Lactobacillus casei BD-II ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2562485-2562549";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2562607-2562868";i:10;s:1:"+";i:11;s:9:"LCBD_2629";i:12;s:7:"Enolase";i:13;s:9:"LCBD_2629";i:14;s:11:"Single gene";i:15;s:7:"3639485";i:16;s:9:"LCBD_2629";i:17;s:31:"glycolytic process [GO:0006096]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017474.1";i:2;s:26:"Lactobacillus casei BD-II ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2985188-2985360";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2985463-2987071";i:10;s:1:"+";i:11;s:9:"LCBD_3061";i:12;s:77:"Amino acid ABC superfamily ATP binding cassette transporter; membrane protein";i:13;s:9:"LCBD_3061";i:14;s:6:"Operon";i:15;s:7:"1048924";i:16;s:19:"LCBD_3061;LCBD_3062";i:17;s:40:"nitrogen compound transport [GO:0071705]";i:18;s:15:"View Structure ";}}
