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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
99649-99828
(-)
lysine
98203-99550 (-)
lysA
LC2W_0089
Operon
DOOR ID:
1047619
LC2W_0085,
LC2W_0086,
LC2W_0087
(ama)
,
LC2W_0088
(dapD)
,
LC2W_0089
(lysA)
View Structure
2
316281-316370
(+)
TPP
316526-317093 (+)
LC2W_0303
LC2W_0303
Operon
DOOR ID:
1047666
LC2W_0303,
LC2W_0304,
LC2W_0305,
LC2W_0306
(theD)
,
LC2W_0307,
LC2W_0308,
LC2W_0309,
LC2W_0310,
LC2W_0311,
LC2W_0312,
LC2W_0313
(yshA)
View Structure
3
916495-916583
(+)
SMK_box
917878-919372 (+)
LC2W_0930
LC2W_0930
Operon
DOOR ID:
1047805
LC2W_0928,
LC2W_0929
(metK)
,
LC2W_0930
View Structure
4
1421375-1421538
(+)
ykoK
1421755-1422571 (+)
LC2W_1477
LC2W_1477
Single gene
DOOR ID:
3638062
LC2W_1477
View Structure
5
1488993-1489111
(+)
FMN
1489207-1489786 (+)
LC2W_1537
LC2W_1537
Single gene
DOOR ID:
3638074
LC2W_1537
View Structure
6
1875462-1875559
(-)
TPP
1874813-1875419 (-)
LC2W_1933
LC2W_1933
Single gene
DOOR ID:
3638126
LC2W_1933
View Structure
7
1959758-1959933
(-)
lysine
1958044-1959499 (-)
LC2W_2012
LC2W_2012
Single gene
DOOR ID:
3638149
LC2W_2012
View Structure
8
2134733-2134831
(-)
preQ1-II
2134102-2134222 (-)
LC2W_2192
LC2W_2192
Operon
DOOR ID:
1048074
LC2W_2191,
LC2W_2192,
LC2W_2193
(queT)
,
LC2W_2194,
LC2W_2195
View Structure
9
2349670-2349764
(-)
THF
2349114-2349633 (-)
LC2W_2413
LC2W_2413
Single gene
DOOR ID:
3638252
LC2W_2413
View Structure
10
2530825-2530879
(-)
fluoride
2530260-2530671 (-)
crcB1
LC2W_2604
Operon
DOOR ID:
1048175
LC2W_2602,
LC2W_2603,
LC2W_2604
(crcB1)
View Structure
11
2531600-2531664
(+)
fluoride
2531722-2531983 (+)
LC2W_2606
LC2W_2606
Single gene
DOOR ID:
3638299
LC2W_2606
View Structure
12
2954304-2954476
(+)
lysine
2954579-2956187 (+)
LC2W_3046
LC2W_3046
Operon
DOOR ID:
1048263
LC2W_3045,
LC2W_3046,
LC2W_3047
View Structure
Genome:
Lactobacillus casei LC2W
(
NC_017473.1
);
Phylum:
Firmicutes
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