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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
118061-118234
(-)
lysine
116336-117950 (-)
LAB52_00610
Glutamine ABC transporter
LAB52_00610
Operon
DOOR ID:
1360389
LAB52_00610,
LAB52_00605
View Structure
2
217121-217284
(+)
ykoK
217360-220024 (+)
LAB52_01105
Cation transporter P-ATPase
LAB52_01105
Single gene
DOOR ID:
3637042
LAB52_01105
View Structure
3
247006-247103
(-)
purine
246353-246932 (-)
LAB52_01230
Xanthine phosphoribosyltransferase (XPRTase) (2)
LAB52_01230
Operon
DOOR ID:
1360419
LAB52_01230,
LAB52_01225
View Structure
4
496011-496174
(+)
ykoK
496254-498942 (+)
LAB52_02560
Magnesium-translocating P-type ATPase
LAB52_02560
Single gene
DOOR ID:
3637133
LAB52_02560
View Structure
5
568250-568342
(+)
TPP
568392-568971 (+)
LAB52_02885
LAB52_02885
Operon
DOOR ID:
1360480
LAB52_02895,
LAB52_02890,
LAB52_02885
View Structure
6
838245-838415
(+)
lysine
838506-839817 (+)
LAB52_04255
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
LAB52_04255
Operon
DOOR ID:
1360533
LAB52_04255,
LAB52_04260,
LAB52_04265,
LAB52_04270,
LAB52_04275,
LAB52_04280,
LAB52_04285
View Structure
7
948455-948569
(+)
FMN
948646-949336 (+)
LAB52_04815
Riboflavin transporter
LAB52_04815
Single gene
DOOR ID:
3637275
LAB52_04815
View Structure
8
973938-973996
(+)
fluoride
974039-974429 (+)
LAB52_04940
Putative fluoride ion transporter CrcB
LAB52_04940
Operon
DOOR ID:
1360558
LAB52_04940,
LAB52_04945
View Structure
9
1587887-1587980
(-)
SMK_box
1585206-1586667 (-)
LAB52_08120
Permease of the major facilitator superfamily protein
LAB52_08120
Operon
DOOR ID:
1360673
LAB52_08120,
LAB52_08125
View Structure
10
1872341-1872438
(+)
purine
1872510-1873821 (+)
LAB52_09590
Xanthine/uracil/vitamin C permease
LAB52_09590
Single gene
DOOR ID:
3637630
LAB52_09590
View Structure
Genome:
Lactobacillus amylovorus GRL1118
(
NC_017470.1
);
Phylum:
Firmicutes
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xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017470.1";i:2;s:33:"Lactobacillus amylovorus GRL1118 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"496011-496174";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"496254-498942";i:10;s:1:"+";i:11;s:11:"LAB52_02560";i:12;s:37:"Magnesium-translocating P-type ATPase";i:13;s:11:"LAB52_02560";i:14;s:11:"Single gene";i:15;s:7:"3637133";i:16;s:11:"LAB52_02560";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017470.1";i:2;s:33:"Lactobacillus amylovorus GRL1118 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"568250-568342";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"568392-568971";i:10;s:1:"+";i:11;s:11:"LAB52_02885";i:12;s:0:"";i:13;s:11:"LAB52_02885";i:14;s:6:"Operon";i:15;s:7:"1360480";i:16;s:35:"LAB52_02895;LAB52_02890;LAB52_02885";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017470.1";i:2;s:33:"Lactobacillus amylovorus GRL1118 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"838245-838415";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"838506-839817";i:10;s:1:"+";i:11;s:11:"LAB52_04255";i:12;s:61:"Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)";i:13;s:11:"LAB52_04255";i:14;s:6:"Operon";i:15;s:7:"1360533";i:16;s:83:"LAB52_04255;LAB52_04260;LAB52_04265;LAB52_04270;LAB52_04275;LAB52_04280;LAB52_04285";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017470.1";i:2;s:33:"Lactobacillus amylovorus GRL1118 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"948455-948569";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"948646-949336";i:10;s:1:"+";i:11;s:11:"LAB52_04815";i:12;s:22:"Riboflavin transporter";i:13;s:11:"LAB52_04815";i:14;s:11:"Single gene";i:15;s:7:"3637275";i:16;s:11:"LAB52_04815";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017470.1";i:2;s:33:"Lactobacillus amylovorus GRL1118 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"973938-973996";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"974039-974429";i:10;s:1:"+";i:11;s:11:"LAB52_04940";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:11:"LAB52_04940";i:14;s:6:"Operon";i:15;s:7:"1360558";i:16;s:23:"LAB52_04940;LAB52_04945";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017470.1";i:2;s:33:"Lactobacillus amylovorus GRL1118 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1587887-1587980";i:6;s:1:"-";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:15:"1585206-1586667";i:10;s:1:"-";i:11;s:11:"LAB52_08120";i:12;s:53:"Permease of the major facilitator superfamily protein";i:13;s:11:"LAB52_08120";i:14;s:6:"Operon";i:15;s:7:"1360673";i:16;s:23:"LAB52_08120;LAB52_08125";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017470.1";i:2;s:33:"Lactobacillus amylovorus GRL1118 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1872341-1872438";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1872510-1873821";i:10;s:1:"+";i:11;s:11:"LAB52_09590";i:12;s:34:"Xanthine/uracil/vitamin C permease";i:13;s:11:"LAB52_09590";i:14;s:11:"Single gene";i:15;s:7:"3637630";i:16;s:11:"LAB52_09590";i:17;s:0:"";i:18;s:15:"View Structure ";}}
