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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
43223-43283
(-)
fluoride
41863-43150 (-)
eno
Enolase (1) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase)
LBHH_0044
Single gene
DOOR ID:
3634145
LBHH_0044
(eno)
View Structure
2
130613-130786
(-)
lysine
128893-130582 (-)
LBHH_0125
Amino acid ABC transporter permease protein
LBHH_0125
Single gene
DOOR ID:
3634177
LBHH_0125
View Structure
3
219790-219953
(+)
ykoK
219993-222702 (+)
LBHH_0209
Cation transporting P-type ATPase
LBHH_0209
Single gene
DOOR ID:
3634261
LBHH_0209
View Structure
4
249014-249111
(-)
purine
248310-248889 (-)
LBHH_0234
Xanthine phosphoribosyltransferase (XPRTase) (2)
LBHH_0234
Single gene
DOOR ID:
3634286
LBHH_0234
View Structure
5
332920-333087
(+)
ykoK
333105-335844 (+)
LBHH_0321
Mg(2+) transport ATPase; P-type 2
LBHH_0321
Single gene
DOOR ID:
3634368
LBHH_0321
View Structure
6
452442-452530
(+)
SMK_box
453745-455206 (+)
LBHH_0431
Permease of the major facilitator superfamily
LBHH_0431
Single gene
DOOR ID:
3634476
LBHH_0431
View Structure
7
1174297-1174355
(-)
fluoride
1173871-1174273 (-)
LBHH_1117
Putative fluoride ion transporter CrcB
LBHH_1117
Single gene
DOOR ID:
3635135
LBHH_1117
View Structure
8
1203462-1203574
(-)
FMN
1202690-1203413 (-)
LBHH_1145
Riboflavin transporter
LBHH_1145
Single gene
DOOR ID:
3635163
LBHH_1145
View Structure
9
1319981-1320156
(-)
lysine
1318572-1319889 (-)
LBHH_1254
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
LBHH_1254
Single gene
DOOR ID:
3635265
LBHH_1254
View Structure
10
1619020-1619110
(-)
TPP
1618392-1618971 (-)
LBHH_1547
ABC-type cobalt transport system; permease component
LBHH_1547
Single gene
DOOR ID:
3635547
LBHH_1547
View Structure
11
2129648-2129745
(+)
purine
2129785-2131135 (+)
LBHH_2020
Xanthine/uracil permease family protein
LBHH_2020
Single gene
DOOR ID:
3636000
LBHH_2020
View Structure
Genome:
Lactobacillus helveticus H10
(
NC_017467.1
);
Phylum:
Firmicutes
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xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017467.1";i:2;s:29:"Lactobacillus helveticus H10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"332920-333087";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"333105-335844";i:10;s:1:"+";i:11;s:9:"LBHH_0321";i:12;s:33:"Mg(2+) transport ATPase; P-type 2";i:13;s:9:"LBHH_0321";i:14;s:11:"Single gene";i:15;s:7:"3634368";i:16;s:9:"LBHH_0321";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017467.1";i:2;s:29:"Lactobacillus helveticus H10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"452442-452530";i:6;s:1:"+";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:13:"453745-455206";i:10;s:1:"+";i:11;s:9:"LBHH_0431";i:12;s:45:"Permease of the major facilitator superfamily";i:13;s:9:"LBHH_0431";i:14;s:11:"Single gene";i:15;s:7:"3634476";i:16;s:9:"LBHH_0431";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017467.1";i:2;s:29:"Lactobacillus helveticus H10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1174297-1174355";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1173871-1174273";i:10;s:1:"-";i:11;s:9:"LBHH_1117";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"LBHH_1117";i:14;s:11:"Single gene";i:15;s:7:"3635135";i:16;s:9:"LBHH_1117";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017467.1";i:2;s:29:"Lactobacillus helveticus H10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1203462-1203574";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1202690-1203413";i:10;s:1:"-";i:11;s:9:"LBHH_1145";i:12;s:22:"Riboflavin transporter";i:13;s:9:"LBHH_1145";i:14;s:11:"Single gene";i:15;s:7:"3635163";i:16;s:9:"LBHH_1145";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017467.1";i:2;s:29:"Lactobacillus helveticus H10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1319981-1320156";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1318572-1319889";i:10;s:1:"-";i:11;s:9:"LBHH_1254";i:12;s:61:"Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)";i:13;s:9:"LBHH_1254";i:14;s:11:"Single gene";i:15;s:7:"3635265";i:16;s:9:"LBHH_1254";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017467.1";i:2;s:29:"Lactobacillus helveticus H10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1619020-1619110";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1618392-1618971";i:10;s:1:"-";i:11;s:9:"LBHH_1547";i:12;s:52:"ABC-type cobalt transport system; permease component";i:13;s:9:"LBHH_1547";i:14;s:11:"Single gene";i:15;s:7:"3635547";i:16;s:9:"LBHH_1547";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017467.1";i:2;s:29:"Lactobacillus helveticus H10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2129648-2129745";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2129785-2131135";i:10;s:1:"+";i:11;s:9:"LBHH_2020";i:12;s:39:"Xanthine/uracil permease family protein";i:13;s:9:"LBHH_2020";i:14;s:11:"Single gene";i:15;s:7:"3636000";i:16;s:9:"LBHH_2020";i:17;s:0:"";i:18;s:15:"View Structure ";}}
