About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
312603-312703
(-)
TPP
310577-312512 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
EPYR_00272
Operon
DOOR ID:
1041496
EPYR_00271
(thiE)
,
EPYR_00272
(thiC)
View Structure
2
516869-517017
(+)
FMN
517124-517781 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
EPYR_00452
Operon
DOOR ID:
1041534
EPYR_00451,
EPYR_00452
(ribB)
View Structure
3
843029-843124
(-)
TPP
842003-842990 (-)
thiB
Thiamine ABC transport system; periplasmic component
EPYR_00765
Operon
DOOR ID:
1041596
EPYR_00763
(thiQ)
,
EPYR_00764
(thiP)
,
EPYR_00765
(thiB)
View Structure
4
1567040-1567141
(+)
TPP
1567175-1567967 (+)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
EPYR_01460
Operon
DOOR ID:
1041736
EPYR_01460
(thiM)
,
EPYR_01461
(thiD)
View Structure
5
2651211-2651346
(-)
MOCO
2649702-2650224 (-)
moaB
Molybdenum cofactor biosynthesis protein B
EPYR_02586
Operon
DOOR ID:
1041952
EPYR_02582
(yaiW)
,
EPYR_02583
(moaE)
,
EPYR_02584
(moaD)
,
EPYR_02585
(moaC)
,
EPYR_02586
(moaB)
,
EPYR_02587
(moaA)
View Structure
6
2979786-2979855
(-)
fluoride
2979323-2979701 (-)
crcB
Putative fluoride ion transporter CrcB
EPYR_02944
Single gene
DOOR ID:
3618557
EPYR_02944
(crcB)
View Structure
7
3647371-3647560
(+)
lysine
3647653-3649006 (+)
lysC
Aspartokinase
EPYR_03591
Single gene
DOOR ID:
3618833
EPYR_03591
(lysC)
View Structure
Genome:
Erwinia pyrifoliae DSM 12163
(
NC_017390.1
);
Phylum:
Gammaproteobacteria
a:8:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017390.1";i:2;s:28:"Erwinia pyrifoliae DSM 12163";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"312603-312703";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"310577-312512";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"EPYR_00272";i:14;s:6:"Operon";i:15;s:7:"1041496";i:16;s:33:"EPYR_00271(thiE);EPYR_00272(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017390.1";i:2;s:28:"Erwinia pyrifoliae DSM 12163";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"516869-517017";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"517124-517781";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"EPYR_00452";i:14;s:6:"Operon";i:15;s:7:"1041534";i:16;s:27:"EPYR_00451;EPYR_00452(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017390.1";i:2;s:28:"Erwinia pyrifoliae DSM 12163";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"843029-843124";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"842003-842990";i:10;s:1:"-";i:11;s:4:"thiB";i:12;s:52:"Thiamine ABC transport system; periplasmic component";i:13;s:10:"EPYR_00765";i:14;s:6:"Operon";i:15;s:7:"1041596";i:16;s:50:"EPYR_00763(thiQ);EPYR_00764(thiP);EPYR_00765(thiB)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017390.1";i:2;s:28:"Erwinia pyrifoliae DSM 12163";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1567040-1567141";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1567175-1567967";i:10;s:1:"+";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"EPYR_01460";i:14;s:6:"Operon";i:15;s:7:"1041736";i:16;s:33:"EPYR_01460(thiM);EPYR_01461(thiD)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017390.1";i:2;s:28:"Erwinia pyrifoliae DSM 12163";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2651211-2651346";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2649702-2650224";i:10;s:1:"-";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:10:"EPYR_02586";i:14;s:6:"Operon";i:15;s:7:"1041952";i:16;s:101:"EPYR_02582(yaiW);EPYR_02583(moaE);EPYR_02584(moaD);EPYR_02585(moaC);EPYR_02586(moaB);EPYR_02587(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017390.1";i:2;s:28:"Erwinia pyrifoliae DSM 12163";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2979786-2979855";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2979323-2979701";i:10;s:1:"-";i:11;s:4:"crcB";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:10:"EPYR_02944";i:14;s:11:"Single gene";i:15;s:7:"3618557";i:16;s:16:"EPYR_02944(crcB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017390.1";i:2;s:28:"Erwinia pyrifoliae DSM 12163";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3647371-3647560";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"3647653-3649006";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:10:"EPYR_03591";i:14;s:11:"Single gene";i:15;s:7:"3618833";i:16;s:16:"EPYR_03591(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}}