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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
212812-212962
(+)
FMN
213058-214033 (+)
ribD
Riboflavin biosynthesis protein RibD (6)
KVU_0198
Operon
DOOR ID:
1356065
KVU_0200
(ribH)
,
KVU_0199
(ribA)
,
KVU_0198
(ribD)
View Structure
2
295736-295919
(-)
cobalamin
293843-295613 (-)
KVU_0263
TonB-dependent receptor
KVU_0263
Operon
DOOR ID:
1356079
KVU_0263,
KVU_0262,
KVU_0261
View Structure
3
323815-323864
(+)
SAM-SAH
323871-325053 (+)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
KVU_0288
Operon
DOOR ID:
1356086
KVU_0288
(metK)
,
KVU_0287
(cutE)
,
KVU_0286
View Structure
4
591542-591618
(+)
sam-alpha
591680-592859 (+)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
KVU_0549
Single gene
DOOR ID:
3615604
KVU_0549
(metZ)
View Structure
5
689028-689072
(-)
mini-ykkC
688690-689008 (-)
sugE2
KVU_0642
Single gene
DOOR ID:
3615636
KVU_0642
(sugE2)
View Structure
6
1154119-1154220
(+)
glycine
1154368-1155484 (+)
gcvT
Glycine cleavage system aminomethyltransferase T (0)
KVU_1097
Operon
DOOR ID:
1356258
KVU_1097
(gcvT)
,
KVU_1098
(gcvH)
,
KVU_1099
(gcvP)
View Structure
7
1204650-1204798
(+)
FMN
1204905-1205544 (+)
ribE
Riboflavin synthase; alpha subunit
KVU_1145
Single gene
DOOR ID:
3615805
KVU_1145
(ribE)
View Structure
8
1638796-1638942
(-)
yybP-ykoY
1638203-1638782 (-)
yebN
Putative manganese efflux pump MntP
KVU_1515
Single gene
DOOR ID:
3615916
KVU_1515
(yebN)
View Structure
9
1955652-1955840
(+)
cobalamin
1955965-1956937 (+)
KVU_1842
KVU_1842
Operon
DOOR ID:
1356418
KVU_1842,
KVU_1843
View Structure
10
2451677-2451789
(-)
TPP
2450638-2451625 (-)
tbpA
ABC thiamine transporter; periplasmic substrate-binding protein
KVU_2320
Operon
DOOR ID:
1356526
KVU_2318
(thiQ)
,
KVU_2319,
KVU_2320
(tbpA)
View Structure
Genome:
Ketogulonigenium vulgarum WSH-001
(
NC_017384.1
);
Phylum:
Alphaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017384.1";i:2;s:34:"Ketogulonigenium vulgarum WSH-001 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"212812-212962";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"213058-214033";i:10;s:1:"+";i:11;s:4:"ribD";i:12;s:40:"Riboflavin biosynthesis protein RibD (6)";i:13;s:8:"KVU_0198";i:14;s:6:"Operon";i:15;s:7:"1356065";i:16;s:44:"KVU_0200(ribH);KVU_0199(ribA);KVU_0198(ribD)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017384.1";i:2;s:34:"Ketogulonigenium vulgarum WSH-001 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"295736-295919";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"293843-295613";i:10;s:1:"-";i:11;s:8:"KVU_0263";i:12;s:23:"TonB-dependent receptor";i:13;s:8:"KVU_0263";i:14;s:6:"Operon";i:15;s:7:"1356079";i:16;s:26:"KVU_0263;KVU_0262;KVU_0261";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017384.1";i:2;s:34:"Ketogulonigenium vulgarum WSH-001 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"323815-323864";i:6;s:1:"+";i:7;s:7:"SAM-SAH";i:8;s:0:"";i:9;s:13:"323871-325053";i:10;s:1:"+";i:11;s:4:"metK";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:8:"KVU_0288";i:14;s:6:"Operon";i:15;s:7:"1356086";i:16;s:38:"KVU_0288(metK);KVU_0287(cutE);KVU_0286";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017384.1";i:2;s:34:"Ketogulonigenium vulgarum WSH-001 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"591542-591618";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:13:"591680-592859";i:10;s:1:"+";i:11;s:4:"metZ";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:8:"KVU_0549";i:14;s:11:"Single gene";i:15;s:7:"3615604";i:16;s:14:"KVU_0549(metZ)";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017384.1";i:2;s:34:"Ketogulonigenium vulgarum WSH-001 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"689028-689072";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"688690-689008";i:10;s:1:"-";i:11;s:5:"sugE2";i:12;s:0:"";i:13;s:8:"KVU_0642";i:14;s:11:"Single gene";i:15;s:7:"3615636";i:16;s:15:"KVU_0642(sugE2)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017384.1";i:2;s:34:"Ketogulonigenium vulgarum WSH-001 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1154119-1154220";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1154368-1155484";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:52:"Glycine cleavage system aminomethyltransferase T (0)";i:13;s:8:"KVU_1097";i:14;s:6:"Operon";i:15;s:7:"1356258";i:16;s:44:"KVU_1097(gcvT);KVU_1098(gcvH);KVU_1099(gcvP)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017384.1";i:2;s:34:"Ketogulonigenium vulgarum WSH-001 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1204650-1204798";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1204905-1205544";i:10;s:1:"+";i:11;s:4:"ribE";i:12;s:35:"Riboflavin synthase; alpha subunit ";i:13;s:8:"KVU_1145";i:14;s:11:"Single gene";i:15;s:7:"3615805";i:16;s:14:"KVU_1145(ribE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017384.1";i:2;s:34:"Ketogulonigenium vulgarum WSH-001 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1638796-1638942";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1638203-1638782";i:10;s:1:"-";i:11;s:4:"yebN";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:8:"KVU_1515";i:14;s:11:"Single gene";i:15;s:7:"3615916";i:16;s:14:"KVU_1515(yebN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017384.1";i:2;s:34:"Ketogulonigenium vulgarum WSH-001 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1955652-1955840";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1955965-1956937";i:10;s:1:"+";i:11;s:8:"KVU_1842";i:12;s:0:"";i:13;s:8:"KVU_1842";i:14;s:6:"Operon";i:15;s:7:"1356418";i:16;s:17:"KVU_1842;KVU_1843";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017384.1";i:2;s:34:"Ketogulonigenium vulgarum WSH-001 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2451677-2451789";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2450638-2451625";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:63:"ABC thiamine transporter; periplasmic substrate-binding protein";i:13;s:8:"KVU_2320";i:14;s:6:"Operon";i:15;s:7:"1356526";i:16;s:38:"KVU_2318(thiQ);KVU_2319;KVU_2320(tbpA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}}
