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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
13855-13953
(+)
SAM
14019-14988 (+)
SLUG_00110
SLUG_00110
Single gene
DOOR ID:
3606677
SLUG_00110
View Structure
2
235864-235963
(-)
TPP
234724-235792 (-)
SLUG_02200
SLUG_02200
Operon
DOOR ID:
1352361
SLUG_02200,
SLUG_02190,
SLUG_02180
View Structure
3
236061-236159
(+)
TPP
236295-236868 (+)
SLUG_02210
SLUG_02210
Single gene
DOOR ID:
3606743
SLUG_02210
View Structure
4
261069-261169
(-)
TPP
260054-260969 (-)
SLUG_02390
SLUG_02390
Single gene
DOOR ID:
3606749
SLUG_02390
View Structure
5
367708-367810
(-)
TPP
366834-367584 (-)
SLUG_03460
SLUG_03460
Operon
DOOR ID:
1352390
SLUG_03460,
SLUG_03450
View Structure
6
424921-425027
(+)
SAM
425130-425946 (+)
SLUG_03870
SLUG_03870
Single gene
DOOR ID:
3606804
SLUG_03870
View Structure
7
547551-547662
(-)
TPP
546897-547488 (-)
SLUG_04960
SLUG_04960
Operon
DOOR ID:
1352416
SLUG_04960,
SLUG_04950,
SLUG_04940,
SLUG_04930,
SLUG_04920
View Structure
8
693444-693545
(+)
TPP
693856-695593 (+)
thiC
SLUG_06350
Single gene
DOOR ID:
3606926
SLUG_06350
(thiC)
View Structure
9
963146-963361
(+)
glmS
963558-965364 (+)
glmS
SLUG_09130
Single gene
DOOR ID:
3607015
SLUG_09130
(glmS)
View Structure
10
1017911-1018014
(+)
TPP
1018100-1018778 (+)
tenA
SLUG_09710
Operon
DOOR ID:
1352497
SLUG_09710
(tenA)
,
SLUG_09720
(thiD)
,
SLUG_09730
(thiM)
,
SLUG_09740
(thiE)
View Structure
11
1207061-1207169
(+)
SAM
1207271-1208468 (+)
SLUG_11470
SLUG_11470
Single gene
DOOR ID:
3607107
SLUG_11470
View Structure
12
1217631-1217760
(+)
FMN
1217835-1218942 (+)
ribD
SLUG_11600
Operon
DOOR ID:
1352539
SLUG_11600
(ribD)
,
SLUG_11610
(ribE)
,
SLUG_11620
(ribA)
,
SLUG_11630
(ribH)
View Structure
13
1319052-1319227
(+)
lysine
1319465-1320959 (+)
lysP
SLUG_12450
Single gene
DOOR ID:
3607152
SLUG_12450
(lysP)
View Structure
14
1443451-1443550
(+)
glycine
1443623-1444715 (+)
gcvT
SLUG_13750
Operon
DOOR ID:
1352587
SLUG_13750
(gcvT)
,
SLUG_13760,
SLUG_13770
View Structure
15
1488155-1488285
(+)
FMN
1488350-1488893 (+)
SLUG_14200
SLUG_14200
Single gene
DOOR ID:
3607185
SLUG_14200
View Structure
16
1557119-1557294
(+)
lysine
1557379-1558582 (+)
lysC
SLUG_14830
Single gene
DOOR ID:
3607202
SLUG_14830
(lysC)
View Structure
17
1890135-1890234
(+)
TPP
1890314-1890890 (+)
ykoE
SLUG_17930
Operon
DOOR ID:
1352682
SLUG_17930
(ykoE)
,
SLUG_17940
(ykoD)
View Structure
18
1943693-1943884
(-)
yybP-ykoY
1942887-1943685 (-)
SLUG_18410
SLUG_18410
Single gene
DOOR ID:
3607319
SLUG_18410
View Structure
19
2107091-2107199
(-)
SAM
2105979-2107005 (-)
SLUG_19850
SLUG_19850
Operon
DOOR ID:
1352719
SLUG_19830,
SLUG_19840,
SLUG_19850
View Structure
20
2220234-2220280
(+)
PreQ1
2220423-2221095 (+)
SLUG_20940
SLUG_20940
Operon
DOOR ID:
1352742
SLUG_20940,
SLUG_20950,
SLUG_20960
View Structure
21
2525549-2525651
(-)
purine
2524752-2525334 (-)
xpt
SLUG_23690
Operon
DOOR ID:
1352800
SLUG_23660
(guaA)
,
SLUG_23670
(guaB)
,
SLUG_23680
(pbuX)
,
SLUG_23690
(xpt)
View Structure
Genome:
Staphylococcus lugdunensis N920143
(
NC_017353.1
);
Phylum:
Firmicutes
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N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"235864-235963";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"234724-235792";i:10;s:1:"-";i:11;s:10:"SLUG_02200";i:12;s:0:"";i:13;s:10:"SLUG_02200";i:14;s:6:"Operon";i:15;s:7:"1352361";i:16;s:32:"SLUG_02200;SLUG_02190;SLUG_02180";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017353.1";i:2;s:34:"Staphylococcus lugdunensis N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"236061-236159";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"236295-236868";i:10;s:1:"+";i:11;s:10:"SLUG_02210";i:12;s:0:"";i:13;s:10:"SLUG_02210";i:14;s:11:"Single gene";i:15;s:7:"3606743";i:16;s:10:"SLUG_02210";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017353.1";i:2;s:34:"Staphylococcus lugdunensis 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N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"424921-425027";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"425130-425946";i:10;s:1:"+";i:11;s:10:"SLUG_03870";i:12;s:0:"";i:13;s:10:"SLUG_03870";i:14;s:11:"Single gene";i:15;s:7:"3606804";i:16;s:10:"SLUG_03870";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017353.1";i:2;s:34:"Staphylococcus lugdunensis N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"547551-547662";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"546897-547488";i:10;s:1:"-";i:11;s:10:"SLUG_04960";i:12;s:0:"";i:13;s:10:"SLUG_04960";i:14;s:6:"Operon";i:15;s:7:"1352416";i:16;s:54:"SLUG_04960;SLUG_04950;SLUG_04940;SLUG_04930;SLUG_04920";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017353.1";i:2;s:34:"Staphylococcus lugdunensis N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"693444-693545";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"693856-695593";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:0:"";i:13;s:10:"SLUG_06350";i:14;s:11:"Single gene";i:15;s:7:"3606926";i:16;s:16:"SLUG_06350(thiC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017353.1";i:2;s:34:"Staphylococcus lugdunensis N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"963146-963361";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"963558-965364";i:10;s:1:"+";i:11;s:4:"glmS";i:12;s:0:"";i:13;s:10:"SLUG_09130";i:14;s:11:"Single gene";i:15;s:7:"3607015";i:16;s:16:"SLUG_09130(glmS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017353.1";i:2;s:34:"Staphylococcus lugdunensis N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1017911-1018014";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1018100-1018778";i:10;s:1:"+";i:11;s:4:"tenA";i:12;s:0:"";i:13;s:10:"SLUG_09710";i:14;s:6:"Operon";i:15;s:7:"1352497";i:16;s:67:"SLUG_09710(tenA);SLUG_09720(thiD);SLUG_09730(thiM);SLUG_09740(thiE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017353.1";i:2;s:34:"Staphylococcus lugdunensis N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1207061-1207169";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1207271-1208468";i:10;s:1:"+";i:11;s:10:"SLUG_11470";i:12;s:0:"";i:13;s:10:"SLUG_11470";i:14;s:11:"Single gene";i:15;s:7:"3607107";i:16;s:10:"SLUG_11470";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017353.1";i:2;s:34:"Staphylococcus lugdunensis N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1217631-1217760";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1217835-1218942";i:10;s:1:"+";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:10:"SLUG_11600";i:14;s:6:"Operon";i:15;s:7:"1352539";i:16;s:67:"SLUG_11600(ribD);SLUG_11610(ribE);SLUG_11620(ribA);SLUG_11630(ribH)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017353.1";i:2;s:34:"Staphylococcus lugdunensis N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1319052-1319227";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1319465-1320959";i:10;s:1:"+";i:11;s:4:"lysP";i:12;s:0:"";i:13;s:10:"SLUG_12450";i:14;s:11:"Single gene";i:15;s:7:"3607152";i:16;s:16:"SLUG_12450(lysP)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017353.1";i:2;s:34:"Staphylococcus lugdunensis N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1443451-1443550";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1443623-1444715";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:10:"SLUG_13750";i:14;s:6:"Operon";i:15;s:7:"1352587";i:16;s:38:"SLUG_13750(gcvT);SLUG_13760;SLUG_13770";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_017353.1";i:2;s:34:"Staphylococcus lugdunensis N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1488155-1488285";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1488350-1488893";i:10;s:1:"+";i:11;s:10:"SLUG_14200";i:12;s:0:"";i:13;s:10:"SLUG_14200";i:14;s:11:"Single gene";i:15;s:7:"3607185";i:16;s:10:"SLUG_14200";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_017353.1";i:2;s:34:"Staphylococcus lugdunensis N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1557119-1557294";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1557379-1558582";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:10:"SLUG_14830";i:14;s:11:"Single gene";i:15;s:7:"3607202";i:16;s:16:"SLUG_14830(lysC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_017353.1";i:2;s:34:"Staphylococcus lugdunensis N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1890135-1890234";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1890314-1890890";i:10;s:1:"+";i:11;s:4:"ykoE";i:12;s:0:"";i:13;s:10:"SLUG_17930";i:14;s:6:"Operon";i:15;s:7:"1352682";i:16;s:33:"SLUG_17930(ykoE);SLUG_17940(ykoD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_017353.1";i:2;s:34:"Staphylococcus lugdunensis N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1943693-1943884";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1942887-1943685";i:10;s:1:"-";i:11;s:10:"SLUG_18410";i:12;s:0:"";i:13;s:10:"SLUG_18410";i:14;s:11:"Single gene";i:15;s:7:"3607319";i:16;s:10:"SLUG_18410";i:17;s:0:"";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_017353.1";i:2;s:34:"Staphylococcus lugdunensis N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2107091-2107199";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2105979-2107005";i:10;s:1:"-";i:11;s:10:"SLUG_19850";i:12;s:0:"";i:13;s:10:"SLUG_19850";i:14;s:6:"Operon";i:15;s:7:"1352719";i:16;s:32:"SLUG_19830;SLUG_19840;SLUG_19850";i:17;s:0:"";i:18;s:15:"View Structure ";}i:20;a:19:{i:0;i:20;i:1;s:11:"NC_017353.1";i:2;s:34:"Staphylococcus lugdunensis N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2220234-2220280";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"2220423-2221095";i:10;s:1:"+";i:11;s:10:"SLUG_20940";i:12;s:0:"";i:13;s:10:"SLUG_20940";i:14;s:6:"Operon";i:15;s:7:"1352742";i:16;s:32:"SLUG_20940;SLUG_20950;SLUG_20960";i:17;s:0:"";i:18;s:15:"View Structure ";}i:21;a:19:{i:0;i:21;i:1;s:11:"NC_017353.1";i:2;s:34:"Staphylococcus lugdunensis N920143";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2525549-2525651";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2524752-2525334";i:10;s:1:"-";i:11;s:3:"xpt";i:12;s:0:"";i:13;s:10:"SLUG_23690";i:14;s:6:"Operon";i:15;s:7:"1352800";i:16;s:66:"SLUG_23660(guaA);SLUG_23670(guaB);SLUG_23680(pbuX);SLUG_23690(xpt)";i:17;s:0:"";i:18;s:15:"View Structure ";}}