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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15947-16045
(+)
SAM
16104-17073 (+)
SARLGA251_00120
SARLGA251_00120
Single gene
DOOR ID:
3604403
SARLGA251_00120
View Structure
2
404912-405014
(+)
purine
405244-405823 (+)
xpt
SARLGA251_03480
Operon
DOOR ID:
1351397
SARLGA251_03510
(guaA)
,
SARLGA251_03500
(guaB)
,
SARLGA251_03490
(pbuX)
,
SARLGA251_03480
(xpt)
View Structure
3
741553-741599
(-)
PreQ1
740714-741383 (-)
queC
SARLGA251_06450
Operon
DOOR ID:
1351461
SARLGA251_06450
(queC)
,
SARLGA251_06440,
SARLGA251_06430
View Structure
4
849160-849263
(+)
SAM
849351-850377 (+)
SARLGA251_07430
SARLGA251_07430
Operon
DOOR ID:
1351479
SARLGA251_07450,
SARLGA251_07440,
SARLGA251_07430
View Structure
5
949003-949093
(+)
preQ1-II
950099-950477 (+)
SARLGA251_08730
SARLGA251_08730
Single gene
DOOR ID:
3604716
SARLGA251_08730
View Structure
6
1026920-1027026
(+)
yybP-ykoY
1027101-1027905 (+)
SARLGA251_09360
SARLGA251_09360
Single gene
DOOR ID:
3604737
SARLGA251_09360
View Structure
7
1086872-1086972
(-)
TPP
1086219-1086795 (-)
ykoE
SARLGA251_09910
Operon
DOOR ID:
1351525
SARLGA251_09910
(ykoE)
,
SARLGA251_09900
(ykoD)
,
SARLGA251_09890
(ykoC)
View Structure
8
1430847-1431022
(+)
lysine
1431103-1432309 (+)
lysC
SARLGA251_13090
Operon
DOOR ID:
1351584
SARLGA251_13130
(dapD)
,
SARLGA251_13120
(dapB)
,
SARLGA251_13110
(dapA)
,
SARLGA251_13100
(asd)
,
SARLGA251_13090
(lysC)
View Structure
9
1555132-1555266
(-)
FMN
1554524-1555070 (-)
SARLGA251_13970
SARLGA251_13970
Single gene
DOOR ID:
3604915
SARLGA251_13970
View Structure
10
1601102-1601199
(-)
glycine
1599935-1601027 (-)
gcvT
SARLGA251_14430
Operon
DOOR ID:
1351618
SARLGA251_14430
(gcvT)
,
SARLGA251_14420,
SARLGA251_14410
View Structure
11
1732024-1732199
(-)
lysine
1730384-1731878 (-)
lysP
SARLGA251_15740
Single gene
DOOR ID:
3604949
SARLGA251_15740
(lysP)
View Structure
12
1845289-1845424
(-)
FMN
1844118-1845162 (-)
ribD
SARLGA251_16580
Operon
DOOR ID:
1351663
SARLGA251_16580
(ribD)
,
SARLGA251_16570
(ribE)
,
SARLGA251_16560
(ribA)
,
SARLGA251_16550
(ribH)
View Structure
13
1860274-1860384
(-)
SAM
1858974-1860168 (-)
SARLGA251_16740
SARLGA251_16740
Single gene
DOOR ID:
3605001
SARLGA251_16740
View Structure
14
2111721-2111823
(-)
TPP
2110951-2111641 (-)
tenA
SARLGA251_18960
Operon
DOOR ID:
1351714
SARLGA251_18960
(tenA)
,
SARLGA251_18950
(thiD)
,
SARLGA251_18940
(thiM)
,
SARLGA251_18930
(thiE)
View Structure
15
2165666-2165882
(-)
glmS
2163658-2165464 (-)
glmS
SARLGA251_19510
Single gene
DOOR ID:
3605113
SARLGA251_19510
(glmS)
View Structure
16
2328755-2328850
(-)
SAM
2327382-2328678 (-)
SARLGA251_21090
SARLGA251_21090
Single gene
DOOR ID:
3605179
SARLGA251_21090
View Structure
Genome:
Staphylococcus aureus subsp. aureus LGA251
(
NC_017349.1
);
Phylum:
Firmicutes
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LGA251";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1430847-1431022";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1431103-1432309";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:15:"SARLGA251_13090";i:14;s:6:"Operon";i:15;s:7:"1351584";i:16;s:108:"SARLGA251_13130(dapD);SARLGA251_13120(dapB);SARLGA251_13110(dapA);SARLGA251_13100(asd);SARLGA251_13090(lysC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017349.1";i:2;s:42:"Staphylococcus aureus subsp. aureus LGA251";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1555132-1555266";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1554524-1555070";i:10;s:1:"-";i:11;s:15:"SARLGA251_13970";i:12;s:0:"";i:13;s:15:"SARLGA251_13970";i:14;s:11:"Single gene";i:15;s:7:"3604915";i:16;s:15:"SARLGA251_13970";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017349.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 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LGA251";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1845289-1845424";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1844118-1845162";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:15:"SARLGA251_16580";i:14;s:6:"Operon";i:15;s:7:"1351663";i:16;s:87:"SARLGA251_16580(ribD);SARLGA251_16570(ribE);SARLGA251_16560(ribA);SARLGA251_16550(ribH)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017349.1";i:2;s:42:"Staphylococcus aureus subsp. aureus LGA251";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1860274-1860384";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1858974-1860168";i:10;s:1:"-";i:11;s:15:"SARLGA251_16740";i:12;s:0:"";i:13;s:15:"SARLGA251_16740";i:14;s:11:"Single gene";i:15;s:7:"3605001";i:16;s:15:"SARLGA251_16740";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017349.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 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LGA251";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2328755-2328850";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2327382-2328678";i:10;s:1:"-";i:11;s:15:"SARLGA251_21090";i:12;s:0:"";i:13;s:15:"SARLGA251_21090";i:14;s:11:"Single gene";i:15;s:7:"3605179";i:16;s:15:"SARLGA251_21090";i:17;s:0:"";i:18;s:15:"View Structure ";}}