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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
120707-120809
(-)
purine
119897-120476 (-)
xpt
HMPREF0772_10106
Operon
DOOR ID:
1350822
HMPREF0772_10106
(xpt)
,
HMPREF0772_10105
(pbuX)
,
HMPREF0772_10104
(guaB)
,
HMPREF0772_10103
(guaA)
View Structure
2
504400-504498
(-)
SAM
503372-504341 (-)
metX
HMPREF0772_10456
Single gene
DOOR ID:
3601305
HMPREF0772_10456
(metX)
View Structure
3
945940-946035
(+)
SAM
946045-947422 (+)
HMPREF0772_10869
HMPREF0772_10869
Single gene
DOOR ID:
3601520
HMPREF0772_10869
View Structure
4
1111313-1111529
(+)
glmS
1111712-1113536 (+)
glmS
HMPREF0772_11039
Single gene
DOOR ID:
3601589
HMPREF0772_11039
(glmS)
View Structure
5
1167207-1167309
(+)
TPP
1167388-1168078 (+)
tenA
HMPREF0772_11097
Operon
DOOR ID:
1350999
HMPREF0772_11097
(tenA)
,
HMPREF0772_11098
(thiD)
,
HMPREF0772_11099
(thiM)
,
HMPREF0772_11100
(thiE)
View Structure
6
1439622-1439733
(+)
SAM
1439736-1441032 (+)
metK
HMPREF0772_11366
Single gene
DOOR ID:
3601721
HMPREF0772_11366
(metK)
View Structure
7
1454848-1454983
(+)
FMN
1455109-1456153 (+)
ribD
HMPREF0772_11383
Operon
DOOR ID:
1351062
HMPREF0772_11383
(ribD)
,
HMPREF0772_11384
(ribE)
,
HMPREF0772_11385
(ribBA)
,
HMPREF0772_11386
(ribH)
View Structure
8
1567506-1567681
(+)
lysine
1567825-1569319 (+)
lysP
HMPREF0772_11469
Single gene
DOOR ID:
3601775
HMPREF0772_11469
(lysP)
View Structure
9
1697485-1697582
(+)
glycine
1697656-1698748 (+)
gcvT
HMPREF0772_11604
Operon
DOOR ID:
1351110
HMPREF0772_11604
(gcvT)
,
HMPREF0772_11605
(gcvP)
,
HMPREF0772_11606
(gcvP2)
View Structure
10
1797422-1797556
(+)
FMN
1797593-1798163 (+)
HMPREF0772_11721
Riboflavin transporter RibU (Riboflavin ECF transporter S component RibU)
HMPREF0772_11721
Single gene
DOOR ID:
3601825
HMPREF0772_11721
View Structure
11
1921950-1922125
(-)
lysine
1920663-1921869 (-)
lysC
HMPREF0772_11816
Operon
DOOR ID:
1351158
HMPREF0772_11812
(dapD)
,
HMPREF0772_11813
(dapB)
,
HMPREF0772_11814
(dapA)
,
HMPREF0772_11815
(asd)
,
HMPREF0772_11816
(lysC)
View Structure
12
2272386-2272486
(+)
TPP
2272562-2273138 (+)
HMPREF0772_12156
HMPREF0772_12156
Operon
DOOR ID:
1351224
HMPREF0772_12156,
HMPREF0772_12157,
HMPREF0772_12158
View Structure
13
2334149-2334255
(-)
yybP-ykoY
2333269-2334073 (-)
HMPREF0772_12213
HMPREF0772_12213
Single gene
DOOR ID:
3602017
HMPREF0772_12213
View Structure
14
2421477-2421567
(-)
preQ1-II
2419613-2420561 (+)
HMPREF0772_12292
HMPREF0772_12292
Single gene
DOOR ID:
3602045
HMPREF0772_12292
View Structure
15
2479808-2479911
(-)
SAM
2478693-2479719 (-)
metN2
HMPREF0772_12366
Operon
DOOR ID:
1351267
HMPREF0772_12364
(metQ)
,
HMPREF0772_12365,
HMPREF0772_12366
(metN2)
View Structure
16
2588082-2588128
(+)
PreQ1
2588297-2588966 (+)
exsB
HMPREF0772_12475
Operon
DOOR ID:
1351289
HMPREF0772_12475
(exsB)
,
HMPREF0772_12476
(ygcM)
,
HMPREF0772_12477
(queE)
View Structure
Genome:
Staphylococcus aureus subsp. aureus TCH60
(
NC_017342.1
);
Phylum:
Firmicutes
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";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017342.1";i:2;s:42:"Staphylococcus aureus subsp. aureus TCH60 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"504400-504498";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"503372-504341";i:10;s:1:"-";i:11;s:4:"metX";i:12;s:0:"";i:13;s:16:"HMPREF0772_10456";i:14;s:11:"Single gene";i:15;s:7:"3601305";i:16;s:22:"HMPREF0772_10456(metX)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017342.1";i:2;s:42:"Staphylococcus aureus subsp. aureus TCH60 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"945940-946035";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"946045-947422";i:10;s:1:"+";i:11;s:16:"HMPREF0772_10869";i:12;s:0:"";i:13;s:16:"HMPREF0772_10869";i:14;s:11:"Single gene";i:15;s:7:"3601520";i:16;s:16:"HMPREF0772_10869";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017342.1";i:2;s:42:"Staphylococcus aureus subsp. aureus TCH60 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1111313-1111529";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"1111712-1113536";i:10;s:1:"+";i:11;s:4:"glmS";i:12;s:0:"";i:13;s:16:"HMPREF0772_11039";i:14;s:11:"Single gene";i:15;s:7:"3601589";i:16;s:22:"HMPREF0772_11039(glmS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017342.1";i:2;s:42:"Staphylococcus aureus subsp. aureus TCH60 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1167207-1167309";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1167388-1168078";i:10;s:1:"+";i:11;s:4:"tenA";i:12;s:0:"";i:13;s:16:"HMPREF0772_11097";i:14;s:6:"Operon";i:15;s:7:"1350999";i:16;s:91:"HMPREF0772_11097(tenA);HMPREF0772_11098(thiD);HMPREF0772_11099(thiM);HMPREF0772_11100(thiE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017342.1";i:2;s:42:"Staphylococcus aureus subsp. aureus TCH60 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1439622-1439733";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1439736-1441032";i:10;s:1:"+";i:11;s:4:"metK";i:12;s:0:"";i:13;s:16:"HMPREF0772_11366";i:14;s:11:"Single gene";i:15;s:7:"3601721";i:16;s:22:"HMPREF0772_11366(metK)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017342.1";i:2;s:42:"Staphylococcus aureus subsp. aureus TCH60 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1454848-1454983";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1455109-1456153";i:10;s:1:"+";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:16:"HMPREF0772_11383";i:14;s:6:"Operon";i:15;s:7:"1351062";i:16;s:92:"HMPREF0772_11383(ribD);HMPREF0772_11384(ribE);HMPREF0772_11385(ribBA);HMPREF0772_11386(ribH)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017342.1";i:2;s:42:"Staphylococcus aureus subsp. aureus TCH60 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1567506-1567681";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1567825-1569319";i:10;s:1:"+";i:11;s:4:"lysP";i:12;s:0:"";i:13;s:16:"HMPREF0772_11469";i:14;s:11:"Single gene";i:15;s:7:"3601775";i:16;s:22:"HMPREF0772_11469(lysP)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017342.1";i:2;s:42:"Staphylococcus aureus subsp. aureus TCH60 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1697485-1697582";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1697656-1698748";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:16:"HMPREF0772_11604";i:14;s:6:"Operon";i:15;s:7:"1351110";i:16;s:69:"HMPREF0772_11604(gcvT);HMPREF0772_11605(gcvP);HMPREF0772_11606(gcvP2)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017342.1";i:2;s:42:"Staphylococcus aureus subsp. aureus TCH60 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1797422-1797556";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1797593-1798163";i:10;s:1:"+";i:11;s:16:"HMPREF0772_11721";i:12;s:73:"Riboflavin transporter RibU (Riboflavin ECF transporter S component RibU)";i:13;s:16:"HMPREF0772_11721";i:14;s:11:"Single gene";i:15;s:7:"3601825";i:16;s:16:"HMPREF0772_11721";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017342.1";i:2;s:42:"Staphylococcus aureus subsp. aureus TCH60 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1921950-1922125";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1920663-1921869";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:16:"HMPREF0772_11816";i:14;s:6:"Operon";i:15;s:7:"1351158";i:16;s:113:"HMPREF0772_11812(dapD);HMPREF0772_11813(dapB);HMPREF0772_11814(dapA);HMPREF0772_11815(asd);HMPREF0772_11816(lysC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017342.1";i:2;s:42:"Staphylococcus aureus subsp. aureus TCH60 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2272386-2272486";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2272562-2273138";i:10;s:1:"+";i:11;s:16:"HMPREF0772_12156";i:12;s:0:"";i:13;s:16:"HMPREF0772_12156";i:14;s:6:"Operon";i:15;s:7:"1351224";i:16;s:50:"HMPREF0772_12156;HMPREF0772_12157;HMPREF0772_12158";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017342.1";i:2;s:42:"Staphylococcus aureus subsp. aureus TCH60 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2334149-2334255";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2333269-2334073";i:10;s:1:"-";i:11;s:16:"HMPREF0772_12213";i:12;s:0:"";i:13;s:16:"HMPREF0772_12213";i:14;s:11:"Single gene";i:15;s:7:"3602017";i:16;s:16:"HMPREF0772_12213";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017342.1";i:2;s:42:"Staphylococcus aureus subsp. aureus TCH60 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2421477-2421567";i:6;s:1:"-";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:15:"2419613-2420561";i:10;s:1:"+";i:11;s:16:"HMPREF0772_12292";i:12;s:0:"";i:13;s:16:"HMPREF0772_12292";i:14;s:11:"Single gene";i:15;s:7:"3602045";i:16;s:16:"HMPREF0772_12292";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_017342.1";i:2;s:42:"Staphylococcus aureus subsp. aureus TCH60 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2479808-2479911";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2478693-2479719";i:10;s:1:"-";i:11;s:5:"metN2";i:12;s:0:"";i:13;s:16:"HMPREF0772_12366";i:14;s:6:"Operon";i:15;s:7:"1351267";i:16;s:63:"HMPREF0772_12364(metQ);HMPREF0772_12365;HMPREF0772_12366(metN2)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_017342.1";i:2;s:42:"Staphylococcus aureus subsp. aureus TCH60 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2588082-2588128";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"2588297-2588966";i:10;s:1:"+";i:11;s:4:"exsB";i:12;s:0:"";i:13;s:16:"HMPREF0772_12475";i:14;s:6:"Operon";i:15;s:7:"1351289";i:16;s:68:"HMPREF0772_12475(exsB);HMPREF0772_12476(ygcM);HMPREF0772_12477(queE)";i:17;s:0:"";i:18;s:15:"View Structure ";}}