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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15423-15521
(+)
SAM
15579-16548 (+)
metX
SAA6008_00012
Single gene
DOOR ID:
3599904
SAA6008_00012
(metX)
View Structure
2
421583-421685
(+)
purine
421915-422494 (+)
xprT
SAA6008_00387
Operon
DOOR ID:
1034155
SAA6008_00387
(xprT)
,
SAA6008_00388
(pbuX)
,
SAA6008_00389
(guaB)
,
SAA6008_00390
(guaA)
View Structure
3
786478-786524
(-)
PreQ1
785639-786308 (-)
queC
SAA6008_00728
Operon
DOOR ID:
1034221
SAA6008_00726
(queE)
,
SAA6008_00727,
SAA6008_00728
(queC)
View Structure
4
901550-901653
(+)
SAM
901741-902767 (+)
SAA6008_00835
SAA6008_00835
Operon
DOOR ID:
1034241
SAA6008_00835,
SAA6008_00836,
SAA6008_00837
View Structure
5
958372-958462
(+)
preQ1-II
959468-959846 (+)
SAA6008_00908
SAA6008_00908
Single gene
DOOR ID:
3600265
SAA6008_00908
View Structure
6
1037088-1037194
(+)
yybP-ykoY
1037269-1038073 (+)
terC
SAA6008_00976
Single gene
DOOR ID:
3600292
SAA6008_00976
(terC)
View Structure
7
1100216-1100316
(-)
TPP
1099563-1100139 (-)
SAA6008_01033
SAA6008_01033
Operon
DOOR ID:
1034278
SAA6008_01031
(ykoC)
,
SAA6008_01032
(ykoD)
,
SAA6008_01033
View Structure
8
1446688-1446863
(+)
lysine
1447019-1448150 (+)
lysC
SAA6008_01357
Operon
DOOR ID:
1034341
SAA6008_01357
(lysC)
,
SAA6008_01358
(asd)
,
SAA6008_01359
(dapA)
,
SAA6008_01360
(dapB)
,
SAA6008_01361
(dapD)
View Structure
9
1573538-1573672
(-)
FMN
1572930-1573476 (-)
SAA6008_01453
SAA6008_01453
Single gene
DOOR ID:
3600482
SAA6008_01453
View Structure
10
1624783-1624880
(-)
glycine
1623616-1624708 (-)
gcvT
SAA6008_01506
Operon
DOOR ID:
1034375
SAA6008_01504
(gcvPB)
,
SAA6008_01505
(gcvPA)
,
SAA6008_01506
(gcvT)
View Structure
11
1760966-1761141
(-)
lysine
1759327-1760821 (-)
lysP
SAA6008_01649
Single gene
DOOR ID:
3600529
SAA6008_01649
(lysP)
View Structure
12
1879170-1879305
(-)
FMN
1877999-1879031 (-)
ribD
SAA6008_01743
Operon
DOOR ID:
1034426
SAA6008_01740
(ribH)
,
SAA6008_01741
(ribA)
,
SAA6008_01742
(ribB)
,
SAA6008_01743
(ribD)
View Structure
13
1899945-1900055
(-)
SAM
1898645-1899839 (-)
metK
SAA6008_01765
Single gene
DOOR ID:
3600589
SAA6008_01765
(metK)
View Structure
14
2245717-2245819
(-)
TPP
2244947-2245637 (-)
tenA
SAA6008_02132
Operon
DOOR ID:
1034500
SAA6008_02129
(thiE)
,
SAA6008_02130
(thiM)
,
SAA6008_02131
(thiD)
,
SAA6008_02132
(tenA)
View Structure
15
2302526-2302742
(-)
glmS
2300518-2302342 (-)
glmS
SAA6008_02191
Single gene
DOOR ID:
3600748
SAA6008_02191
(glmS)
View Structure
16
2476969-2477064
(-)
SAM
2475578-2476892 (-)
SAA6008_02362
SAA6008_02362
Single gene
DOOR ID:
3600815
SAA6008_02362
View Structure
Genome:
Staphylococcus aureus subsp. aureus str. JKD6008
(
NC_017341.1
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017341.1";i:2;s:49:"Staphylococcus aureus subsp. aureus str. JKD6008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"15423-15521";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"15579-16548";i:10;s:1:"+";i:11;s:4:"metX";i:12;s:0:"";i:13;s:13:"SAA6008_00012";i:14;s:11:"Single gene";i:15;s:7:"3599904";i:16;s:19:"SAA6008_00012(metX)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017341.1";i:2;s:49:"Staphylococcus aureus subsp. aureus str. JKD6008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"421583-421685";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"421915-422494";i:10;s:1:"+";i:11;s:4:"xprT";i:12;s:0:"";i:13;s:13:"SAA6008_00387";i:14;s:6:"Operon";i:15;s:7:"1034155";i:16;s:79:"SAA6008_00387(xprT);SAA6008_00388(pbuX);SAA6008_00389(guaB);SAA6008_00390(guaA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017341.1";i:2;s:49:"Staphylococcus aureus subsp. aureus str. JKD6008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"786478-786524";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"785639-786308";i:10;s:1:"-";i:11;s:4:"queC";i:12;s:0:"";i:13;s:13:"SAA6008_00728";i:14;s:6:"Operon";i:15;s:7:"1034221";i:16;s:53:"SAA6008_00726(queE);SAA6008_00727;SAA6008_00728(queC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017341.1";i:2;s:49:"Staphylococcus aureus subsp. aureus str. JKD6008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"901550-901653";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"901741-902767";i:10;s:1:"+";i:11;s:13:"SAA6008_00835";i:12;s:0:"";i:13;s:13:"SAA6008_00835";i:14;s:6:"Operon";i:15;s:7:"1034241";i:16;s:41:"SAA6008_00835;SAA6008_00836;SAA6008_00837";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017341.1";i:2;s:49:"Staphylococcus aureus subsp. aureus str. JKD6008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"958372-958462";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"959468-959846";i:10;s:1:"+";i:11;s:13:"SAA6008_00908";i:12;s:0:"";i:13;s:13:"SAA6008_00908";i:14;s:11:"Single gene";i:15;s:7:"3600265";i:16;s:13:"SAA6008_00908";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017341.1";i:2;s:49:"Staphylococcus aureus subsp. aureus str. JKD6008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1037088-1037194";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1037269-1038073";i:10;s:1:"+";i:11;s:4:"terC";i:12;s:0:"";i:13;s:13:"SAA6008_00976";i:14;s:11:"Single gene";i:15;s:7:"3600292";i:16;s:19:"SAA6008_00976(terC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017341.1";i:2;s:49:"Staphylococcus aureus subsp. aureus str. JKD6008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1100216-1100316";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1099563-1100139";i:10;s:1:"-";i:11;s:13:"SAA6008_01033";i:12;s:0:"";i:13;s:13:"SAA6008_01033";i:14;s:6:"Operon";i:15;s:7:"1034278";i:16;s:53:"SAA6008_01031(ykoC);SAA6008_01032(ykoD);SAA6008_01033";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017341.1";i:2;s:49:"Staphylococcus aureus subsp. aureus str. JKD6008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1446688-1446863";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1447019-1448150";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:13:"SAA6008_01357";i:14;s:6:"Operon";i:15;s:7:"1034341";i:16;s:98:"SAA6008_01357(lysC);SAA6008_01358(asd);SAA6008_01359(dapA);SAA6008_01360(dapB);SAA6008_01361(dapD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017341.1";i:2;s:49:"Staphylococcus aureus subsp. aureus str. JKD6008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1573538-1573672";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1572930-1573476";i:10;s:1:"-";i:11;s:13:"SAA6008_01453";i:12;s:0:"";i:13;s:13:"SAA6008_01453";i:14;s:11:"Single gene";i:15;s:7:"3600482";i:16;s:13:"SAA6008_01453";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017341.1";i:2;s:49:"Staphylococcus aureus subsp. aureus str. JKD6008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1624783-1624880";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1623616-1624708";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:13:"SAA6008_01506";i:14;s:6:"Operon";i:15;s:7:"1034375";i:16;s:61:"SAA6008_01504(gcvPB);SAA6008_01505(gcvPA);SAA6008_01506(gcvT)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017341.1";i:2;s:49:"Staphylococcus aureus subsp. aureus str. JKD6008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1760966-1761141";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1759327-1760821";i:10;s:1:"-";i:11;s:4:"lysP";i:12;s:0:"";i:13;s:13:"SAA6008_01649";i:14;s:11:"Single gene";i:15;s:7:"3600529";i:16;s:19:"SAA6008_01649(lysP)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017341.1";i:2;s:49:"Staphylococcus aureus subsp. aureus str. JKD6008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1879170-1879305";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1877999-1879031";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:13:"SAA6008_01743";i:14;s:6:"Operon";i:15;s:7:"1034426";i:16;s:79:"SAA6008_01740(ribH);SAA6008_01741(ribA);SAA6008_01742(ribB);SAA6008_01743(ribD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017341.1";i:2;s:49:"Staphylococcus aureus subsp. aureus str. JKD6008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1899945-1900055";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1898645-1899839";i:10;s:1:"-";i:11;s:4:"metK";i:12;s:0:"";i:13;s:13:"SAA6008_01765";i:14;s:11:"Single gene";i:15;s:7:"3600589";i:16;s:19:"SAA6008_01765(metK)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017341.1";i:2;s:49:"Staphylococcus aureus subsp. aureus str. JKD6008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2245717-2245819";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2244947-2245637";i:10;s:1:"-";i:11;s:4:"tenA";i:12;s:0:"";i:13;s:13:"SAA6008_02132";i:14;s:6:"Operon";i:15;s:7:"1034500";i:16;s:79:"SAA6008_02129(thiE);SAA6008_02130(thiM);SAA6008_02131(thiD);SAA6008_02132(tenA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_017341.1";i:2;s:49:"Staphylococcus aureus subsp. aureus str. JKD6008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2302526-2302742";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2300518-2302342";i:10;s:1:"-";i:11;s:4:"glmS";i:12;s:0:"";i:13;s:13:"SAA6008_02191";i:14;s:11:"Single gene";i:15;s:7:"3600748";i:16;s:19:"SAA6008_02191(glmS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_017341.1";i:2;s:49:"Staphylococcus aureus subsp. aureus str. JKD6008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2476969-2477064";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2475578-2476892";i:10;s:1:"-";i:11;s:13:"SAA6008_02362";i:12;s:0:"";i:13;s:13:"SAA6008_02362";i:14;s:11:"Single gene";i:15;s:7:"3600815";i:16;s:13:"SAA6008_02362";i:17;s:0:"";i:18;s:15:"View Structure ";}}