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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15956-16054
(+)
SAM
16092-17082 (+)
SA2981_0012
SA2981_0012
Single gene
DOOR ID:
3598729
SA2981_0012
View Structure
2
428402-428504
(+)
purine
428734-429313 (+)
xprT
SA2981_0386
Operon
DOOR ID:
1350358
SA2981_0389
(guaA)
,
SA2981_0388
(guaB)
,
SA2981_0387
(pbuX)
,
SA2981_0386
(xprT)
View Structure
3
758832-758878
(-)
PreQ1
757993-758662 (-)
queC
SA2981_0689
Operon
DOOR ID:
1350422
SA2981_0689
(queC)
,
SA2981_0688
(queD)
,
SA2981_0687
(queE)
View Structure
4
865912-866015
(+)
SAM
866103-867129 (+)
SA2981_0792
SA2981_0792
Operon
DOOR ID:
1350442
SA2981_0794,
SA2981_0793,
SA2981_0792
View Structure
5
953171-953261
(+)
preQ1-II
954383-954644 (+)
SA2981_0910
SA2981_0910
Single gene
DOOR ID:
3599087
SA2981_0910
View Structure
6
1030639-1030745
(+)
yybP-ykoY
1030820-1031624 (+)
SA2981_0975
SA2981_0975
Single gene
DOOR ID:
3599110
SA2981_0975
View Structure
7
1090695-1090795
(-)
TPP
1090042-1090618 (-)
SA2981_1033
SA2981_1033
Operon
DOOR ID:
1350485
SA2981_1033,
SA2981_1032,
SA2981_1031
View Structure
8
1434077-1434252
(+)
lysine
1434333-1435539 (+)
lysC
SA2981_1347
Operon
DOOR ID:
1350548
SA2981_1351
(dapD)
,
SA2981_1350
(dapB)
,
SA2981_1349
(dapA)
,
SA2981_1348
(asd)
,
SA2981_1347
(lysC)
View Structure
9
1558349-1558483
(-)
FMN
1557741-1558287 (-)
ribU
SA2981_1441
Single gene
DOOR ID:
3599292
SA2981_1441
(ribU)
View Structure
10
1611417-1611514
(-)
glycine
1610250-1611342 (-)
SA2981_1495
SA2981_1495
Operon
DOOR ID:
1350584
SA2981_1495,
SA2981_1494,
SA2981_1493
View Structure
11
1748293-1748468
(-)
lysine
1746654-1748148 (-)
lysP
SA2981_1641
Single gene
DOOR ID:
3599346
SA2981_1641
(lysP)
View Structure
12
1861476-1861611
(-)
FMN
1860305-1861349 (-)
ribD
SA2981_1726
Operon
DOOR ID:
1350630
SA2981_1726
(ribD)
,
SA2981_1725
(ribB)
,
SA2981_1724
(ribA)
,
SA2981_1723
(ribH)
View Structure
13
1877548-1877659
(-)
SAM
1876245-1877442 (-)
metK
SA2981_1745
Single gene
DOOR ID:
3599401
SA2981_1745
(metK)
View Structure
14
2169994-2170096
(-)
TPP
2169224-2169914 (-)
tenA
SA2981_2035
Operon
DOOR ID:
1350698
SA2981_2035
(tenA)
,
SA2981_2034
(thiD)
,
SA2981_2033
(thiM)
,
SA2981_2032
(thiE)
View Structure
15
2225321-2225537
(-)
glmS
2223313-2225119 (-)
glmS
SA2981_2093
Single gene
DOOR ID:
3599531
SA2981_2093
(glmS)
View Structure
16
2394775-2394870
(-)
SAM
2393384-2394764 (-)
metT
SA2981_2265
Single gene
DOOR ID:
3599603
SA2981_2265
(metT)
View Structure
Genome:
Staphylococcus aureus 04-02981
(
NC_017340.1
);
Phylum:
Firmicutes
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";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"428402-428504";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"428734-429313";i:10;s:1:"+";i:11;s:4:"xprT";i:12;s:0:"";i:13;s:11:"SA2981_0386";i:14;s:6:"Operon";i:15;s:7:"1350358";i:16;s:71:"SA2981_0389(guaA);SA2981_0388(guaB);SA2981_0387(pbuX);SA2981_0386(xprT)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017340.1";i:2;s:31:"Staphylococcus aureus 04-02981 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"758832-758878";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"757993-758662";i:10;s:1:"-";i:11;s:4:"queC";i:12;s:0:"";i:13;s:11:"SA2981_0689";i:14;s:6:"Operon";i:15;s:7:"1350422";i:16;s:53:"SA2981_0689(queC);SA2981_0688(queD);SA2981_0687(queE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017340.1";i:2;s:31:"Staphylococcus aureus 04-02981 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"865912-866015";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"866103-867129";i:10;s:1:"+";i:11;s:11:"SA2981_0792";i:12;s:0:"";i:13;s:11:"SA2981_0792";i:14;s:6:"Operon";i:15;s:7:"1350442";i:16;s:35:"SA2981_0794;SA2981_0793;SA2981_0792";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017340.1";i:2;s:31:"Staphylococcus aureus 04-02981 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"953171-953261";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"954383-954644";i:10;s:1:"+";i:11;s:11:"SA2981_0910";i:12;s:0:"";i:13;s:11:"SA2981_0910";i:14;s:11:"Single gene";i:15;s:7:"3599087";i:16;s:11:"SA2981_0910";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017340.1";i:2;s:31:"Staphylococcus aureus 04-02981 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1030639-1030745";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1030820-1031624";i:10;s:1:"+";i:11;s:11:"SA2981_0975";i:12;s:0:"";i:13;s:11:"SA2981_0975";i:14;s:11:"Single gene";i:15;s:7:"3599110";i:16;s:11:"SA2981_0975";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017340.1";i:2;s:31:"Staphylococcus aureus 04-02981 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1090695-1090795";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1090042-1090618";i:10;s:1:"-";i:11;s:11:"SA2981_1033";i:12;s:0:"";i:13;s:11:"SA2981_1033";i:14;s:6:"Operon";i:15;s:7:"1350485";i:16;s:35:"SA2981_1033;SA2981_1032;SA2981_1031";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017340.1";i:2;s:31:"Staphylococcus aureus 04-02981 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1434077-1434252";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1434333-1435539";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:11:"SA2981_1347";i:14;s:6:"Operon";i:15;s:7:"1350548";i:16;s:88:"SA2981_1351(dapD);SA2981_1350(dapB);SA2981_1349(dapA);SA2981_1348(asd);SA2981_1347(lysC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017340.1";i:2;s:31:"Staphylococcus aureus 04-02981 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1558349-1558483";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1557741-1558287";i:10;s:1:"-";i:11;s:4:"ribU";i:12;s:0:"";i:13;s:11:"SA2981_1441";i:14;s:11:"Single gene";i:15;s:7:"3599292";i:16;s:17:"SA2981_1441(ribU)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017340.1";i:2;s:31:"Staphylococcus aureus 04-02981 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1611417-1611514";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1610250-1611342";i:10;s:1:"-";i:11;s:11:"SA2981_1495";i:12;s:0:"";i:13;s:11:"SA2981_1495";i:14;s:6:"Operon";i:15;s:7:"1350584";i:16;s:35:"SA2981_1495;SA2981_1494;SA2981_1493";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017340.1";i:2;s:31:"Staphylococcus aureus 04-02981 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1748293-1748468";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1746654-1748148";i:10;s:1:"-";i:11;s:4:"lysP";i:12;s:0:"";i:13;s:11:"SA2981_1641";i:14;s:11:"Single gene";i:15;s:7:"3599346";i:16;s:17:"SA2981_1641(lysP)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017340.1";i:2;s:31:"Staphylococcus aureus 04-02981 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1861476-1861611";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1860305-1861349";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:11:"SA2981_1726";i:14;s:6:"Operon";i:15;s:7:"1350630";i:16;s:71:"SA2981_1726(ribD);SA2981_1725(ribB);SA2981_1724(ribA);SA2981_1723(ribH)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017340.1";i:2;s:31:"Staphylococcus aureus 04-02981 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1877548-1877659";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1876245-1877442";i:10;s:1:"-";i:11;s:4:"metK";i:12;s:0:"";i:13;s:11:"SA2981_1745";i:14;s:11:"Single gene";i:15;s:7:"3599401";i:16;s:17:"SA2981_1745(metK)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017340.1";i:2;s:31:"Staphylococcus aureus 04-02981 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2169994-2170096";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2169224-2169914";i:10;s:1:"-";i:11;s:4:"tenA";i:12;s:0:"";i:13;s:11:"SA2981_2035";i:14;s:6:"Operon";i:15;s:7:"1350698";i:16;s:71:"SA2981_2035(tenA);SA2981_2034(thiD);SA2981_2033(thiM);SA2981_2032(thiE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_017340.1";i:2;s:31:"Staphylococcus aureus 04-02981 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2225321-2225537";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2223313-2225119";i:10;s:1:"-";i:11;s:4:"glmS";i:12;s:0:"";i:13;s:11:"SA2981_2093";i:14;s:11:"Single gene";i:15;s:7:"3599531";i:16;s:17:"SA2981_2093(glmS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_017340.1";i:2;s:31:"Staphylococcus aureus 04-02981 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2394775-2394870";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2393384-2394764";i:10;s:1:"-";i:11;s:4:"metT";i:12;s:0:"";i:13;s:11:"SA2981_2265";i:14;s:11:"Single gene";i:15;s:7:"3599603";i:16;s:17:"SA2981_2265(metT)";i:17;s:0:"";i:18;s:15:"View Structure ";}}