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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15420-15518
(+)
SAM
15577-16546 (+)
metX
SAA6159_00012
Single gene
DOOR ID:
3597590
SAA6159_00012
(metX)
View Structure
2
412249-412351
(+)
purine
412583-413162 (+)
xprT
SAA6159_00362
Operon
DOOR ID:
1033250
SAA6159_00362
(xprT)
,
SAA6159_00363
(pbuX)
,
SAA6159_00364
(guaB)
,
SAA6159_00365
(guaA)
View Structure
3
744943-744989
(-)
PreQ1
744104-744773 (-)
queC
SAA6159_00667
Operon
DOOR ID:
1033318
SAA6159_00665
(queE)
,
SAA6159_00666,
SAA6159_00667
(queC)
View Structure
4
854827-854930
(+)
SAM
855018-856044 (+)
SAA6159_00768
SAA6159_00768
Operon
DOOR ID:
1033336
SAA6159_00768,
SAA6159_00769,
SAA6159_00770
View Structure
5
896584-896674
(+)
preQ1-II
897680-898058 (+)
SAA6159_00814
SAA6159_00814
Single gene
DOOR ID:
3597913
SAA6159_00814
View Structure
6
974838-974944
(+)
yybP-ykoY
975025-975823 (+)
terC
SAA6159_00877
Single gene
DOOR ID:
3597938
SAA6159_00877
(terC)
View Structure
7
1036445-1036545
(-)
TPP
1035792-1036368 (-)
SAA6159_00933
SAA6159_00933
Operon
DOOR ID:
1033367
SAA6159_00931
(ykoC)
,
SAA6159_00932
(ykoD)
,
SAA6159_00933
View Structure
8
1385280-1385455
(+)
lysine
1385536-1386742 (+)
lysC
SAA6159_01259
Operon
DOOR ID:
1033426
SAA6159_01259
(lysC)
,
SAA6159_01260
(asd)
,
SAA6159_01261
(dapA)
,
SAA6159_01262
(dapB)
,
SAA6159_01263
(dapD)
View Structure
9
1510150-1510284
(-)
FMN
1509542-1510088 (-)
SAA6159_01348
SAA6159_01348
Single gene
DOOR ID:
3598131
SAA6159_01348
View Structure
10
1613143-1613240
(-)
glycine
1611976-1613068 (-)
gcvT
SAA6159_01472
Operon
DOOR ID:
1033470
SAA6159_01470
(gcvPB)
,
SAA6159_01471
(gcvPA)
,
SAA6159_01472
(gcvT)
View Structure
11
1741522-1741697
(-)
lysine
1739882-1741376 (-)
lysP
SAA6159_01606
Single gene
DOOR ID:
3598184
SAA6159_01606
(lysP)
View Structure
12
1854857-1854992
(-)
FMN
1853686-1854718 (-)
ribD
SAA6159_01691
Operon
DOOR ID:
1033516
SAA6159_01688
(ribH)
,
SAA6159_01689
(ribA)
,
SAA6159_01690
(ribB)
,
SAA6159_01691
(ribD)
View Structure
13
1871094-1871204
(-)
SAM
1869794-1870988 (-)
metK
SAA6159_01708
Single gene
DOOR ID:
3598238
SAA6159_01708
(metK)
View Structure
14
2162706-2162808
(-)
TPP
2161936-2162626 (-)
tenA
SAA6159_02008
Operon
DOOR ID:
1033578
SAA6159_02005
(thiE)
,
SAA6159_02006
(thiM)
,
SAA6159_02007
(thiD)
,
SAA6159_02008
(tenA)
View Structure
15
2218409-2218625
(-)
glmS
2216401-2218207 (-)
glmS
SAA6159_02064
Single gene
DOOR ID:
3598373
SAA6159_02064
(glmS)
View Structure
16
2388184-2388279
(-)
SAM
2386793-2388107 (-)
SAA6159_02230
SAA6159_02230
Single gene
DOOR ID:
3598437
SAA6159_02230
View Structure
Genome:
Staphylococcus aureus subsp. aureus JKD6159
(
NC_017338.1
);
Phylum:
Firmicutes
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";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"412249-412351";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"412583-413162";i:10;s:1:"+";i:11;s:4:"xprT";i:12;s:0:"";i:13;s:13:"SAA6159_00362";i:14;s:6:"Operon";i:15;s:7:"1033250";i:16;s:79:"SAA6159_00362(xprT);SAA6159_00363(pbuX);SAA6159_00364(guaB);SAA6159_00365(guaA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017338.1";i:2;s:44:"Staphylococcus aureus subsp. aureus JKD6159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"744943-744989";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"744104-744773";i:10;s:1:"-";i:11;s:4:"queC";i:12;s:0:"";i:13;s:13:"SAA6159_00667";i:14;s:6:"Operon";i:15;s:7:"1033318";i:16;s:53:"SAA6159_00665(queE);SAA6159_00666;SAA6159_00667(queC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017338.1";i:2;s:44:"Staphylococcus aureus subsp. aureus JKD6159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"854827-854930";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"855018-856044";i:10;s:1:"+";i:11;s:13:"SAA6159_00768";i:12;s:0:"";i:13;s:13:"SAA6159_00768";i:14;s:6:"Operon";i:15;s:7:"1033336";i:16;s:41:"SAA6159_00768;SAA6159_00769;SAA6159_00770";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017338.1";i:2;s:44:"Staphylococcus aureus subsp. aureus JKD6159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"896584-896674";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"897680-898058";i:10;s:1:"+";i:11;s:13:"SAA6159_00814";i:12;s:0:"";i:13;s:13:"SAA6159_00814";i:14;s:11:"Single gene";i:15;s:7:"3597913";i:16;s:13:"SAA6159_00814";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017338.1";i:2;s:44:"Staphylococcus aureus subsp. aureus JKD6159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"974838-974944";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"975025-975823";i:10;s:1:"+";i:11;s:4:"terC";i:12;s:0:"";i:13;s:13:"SAA6159_00877";i:14;s:11:"Single gene";i:15;s:7:"3597938";i:16;s:19:"SAA6159_00877(terC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017338.1";i:2;s:44:"Staphylococcus aureus subsp. aureus JKD6159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1036445-1036545";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1035792-1036368";i:10;s:1:"-";i:11;s:13:"SAA6159_00933";i:12;s:0:"";i:13;s:13:"SAA6159_00933";i:14;s:6:"Operon";i:15;s:7:"1033367";i:16;s:53:"SAA6159_00931(ykoC);SAA6159_00932(ykoD);SAA6159_00933";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017338.1";i:2;s:44:"Staphylococcus aureus subsp. aureus JKD6159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1385280-1385455";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1385536-1386742";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:13:"SAA6159_01259";i:14;s:6:"Operon";i:15;s:7:"1033426";i:16;s:98:"SAA6159_01259(lysC);SAA6159_01260(asd);SAA6159_01261(dapA);SAA6159_01262(dapB);SAA6159_01263(dapD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017338.1";i:2;s:44:"Staphylococcus aureus subsp. aureus JKD6159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1510150-1510284";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1509542-1510088";i:10;s:1:"-";i:11;s:13:"SAA6159_01348";i:12;s:0:"";i:13;s:13:"SAA6159_01348";i:14;s:11:"Single gene";i:15;s:7:"3598131";i:16;s:13:"SAA6159_01348";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017338.1";i:2;s:44:"Staphylococcus aureus subsp. aureus JKD6159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1613143-1613240";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1611976-1613068";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:13:"SAA6159_01472";i:14;s:6:"Operon";i:15;s:7:"1033470";i:16;s:61:"SAA6159_01470(gcvPB);SAA6159_01471(gcvPA);SAA6159_01472(gcvT)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017338.1";i:2;s:44:"Staphylococcus aureus subsp. aureus JKD6159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1741522-1741697";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1739882-1741376";i:10;s:1:"-";i:11;s:4:"lysP";i:12;s:0:"";i:13;s:13:"SAA6159_01606";i:14;s:11:"Single gene";i:15;s:7:"3598184";i:16;s:19:"SAA6159_01606(lysP)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017338.1";i:2;s:44:"Staphylococcus aureus subsp. aureus JKD6159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1854857-1854992";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1853686-1854718";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:13:"SAA6159_01691";i:14;s:6:"Operon";i:15;s:7:"1033516";i:16;s:79:"SAA6159_01688(ribH);SAA6159_01689(ribA);SAA6159_01690(ribB);SAA6159_01691(ribD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017338.1";i:2;s:44:"Staphylococcus aureus subsp. aureus JKD6159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1871094-1871204";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1869794-1870988";i:10;s:1:"-";i:11;s:4:"metK";i:12;s:0:"";i:13;s:13:"SAA6159_01708";i:14;s:11:"Single gene";i:15;s:7:"3598238";i:16;s:19:"SAA6159_01708(metK)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017338.1";i:2;s:44:"Staphylococcus aureus subsp. aureus JKD6159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2162706-2162808";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2161936-2162626";i:10;s:1:"-";i:11;s:4:"tenA";i:12;s:0:"";i:13;s:13:"SAA6159_02008";i:14;s:6:"Operon";i:15;s:7:"1033578";i:16;s:79:"SAA6159_02005(thiE);SAA6159_02006(thiM);SAA6159_02007(thiD);SAA6159_02008(tenA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_017338.1";i:2;s:44:"Staphylococcus aureus subsp. aureus JKD6159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2218409-2218625";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2216401-2218207";i:10;s:1:"-";i:11;s:4:"glmS";i:12;s:0:"";i:13;s:13:"SAA6159_02064";i:14;s:11:"Single gene";i:15;s:7:"3598373";i:16;s:19:"SAA6159_02064(glmS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_017338.1";i:2;s:44:"Staphylococcus aureus subsp. aureus JKD6159 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2388184-2388279";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2386793-2388107";i:10;s:1:"-";i:11;s:13:"SAA6159_02230";i:12;s:0:"";i:13;s:13:"SAA6159_02230";i:14;s:11:"Single gene";i:15;s:7:"3598437";i:16;s:13:"SAA6159_02230";i:17;s:0:"";i:18;s:15:"View Structure ";}}