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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15948-16046
(+)
SAM
16105-17074 (+)
SAPIG0012
SAPIG0012
Single gene
DOOR ID:
3595208
SAPIG0012
View Structure
2
479212-479314
(+)
purine
479544-480123 (+)
xpt
SAPIG0465
Operon
DOOR ID:
1032716
SAPIG0465
(xpt)
,
SAPIG0466,
SAPIG0467
(guaB)
,
SAPIG0468
View Structure
3
824398-824444
(-)
PreQ1
823559-824228 (-)
SAPIG0789
SAPIG0789
Operon
DOOR ID:
1032781
SAPIG0787
(queE)
,
SAPIG0788,
SAPIG0789
View Structure
4
932634-932737
(+)
SAM
932825-933851 (+)
SAPIG0892
SAPIG0892
Operon
DOOR ID:
1032801
SAPIG0892,
SAPIG0893,
SAPIG0894
View Structure
5
974759-974849
(+)
preQ1-II
975855-976233 (+)
SAPIG0938
SAPIG0938
Single gene
DOOR ID:
3595600
SAPIG0938
View Structure
6
1068676-1068782
(+)
yybP-ykoY
1068863-1069661 (+)
SAPIG1017
SAPIG1017
Single gene
DOOR ID:
3595633
SAPIG1017
View Structure
7
1128497-1128597
(-)
TPP
1127844-1128420 (-)
SAPIG1075
SAPIG1075
Operon
DOOR ID:
1032834
SAPIG1073,
SAPIG1074,
SAPIG1075
View Structure
8
1468411-1468586
(+)
lysine
1468667-1469873 (+)
SAPIG1394
SAPIG1394
Operon
DOOR ID:
1032895
SAPIG1394,
SAPIG1395
(asd)
,
SAPIG1396
(dapA)
,
SAPIG1397
(dapB)
,
SAPIG1398
View Structure
9
1592874-1593008
(-)
FMN
1592266-1592812 (-)
SAPIG1484
SAPIG1484
Single gene
DOOR ID:
3595819
SAPIG1484
View Structure
10
1690669-1690766
(-)
glycine
1689502-1690594 (-)
gcvT
SAPIG1602
Operon
DOOR ID:
1032942
SAPIG1600,
SAPIG1601,
SAPIG1602
(gcvT)
View Structure
11
1820763-1820938
(-)
lysine
1819124-1820618 (-)
SAPIG1736
SAPIG1736
Single gene
DOOR ID:
3595875
SAPIG1736
View Structure
12
1933701-1933836
(-)
FMN
1932530-1933574 (-)
ribD
SAPIG1822
Operon
DOOR ID:
1032989
SAPIG1819
(ribH)
,
SAPIG1820,
SAPIG1821
(ribE)
,
SAPIG1822
(ribD)
View Structure
13
1949064-1949175
(-)
SAM
1947764-1948958 (-)
metK
SAPIG1838
Single gene
DOOR ID:
3595928
SAPIG1838
(metK)
View Structure
14
2218243-2218345
(-)
TPP
2217473-2218163 (-)
thiD
SAPIG2137
Operon
DOOR ID:
1033047
SAPIG2134
(thiE)
,
SAPIG2135,
SAPIG2136
(thiD)
,
SAPIG2137
View Structure
15
2286004-2286220
(-)
glmS
2283996-2285802 (-)
glmS
SAPIG2209
Single gene
DOOR ID:
3596062
SAPIG2209
(glmS)
View Structure
16
2452917-2453012
(-)
SAM
2451529-2452840 (-)
SAPIG2377
SAPIG2377
Single gene
DOOR ID:
3596130
SAPIG2377
View Structure
Genome:
Staphylococcus aureus subsp. aureus ST398
(
NC_017333.1
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017333.1";i:2;s:41:"Staphylococcus aureus subsp. aureus ST398";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"15948-16046";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"16105-17074";i:10;s:1:"+";i:11;s:9:"SAPIG0012";i:12;s:0:"";i:13;s:9:"SAPIG0012";i:14;s:11:"Single gene";i:15;s:7:"3595208";i:16;s:9:"SAPIG0012";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017333.1";i:2;s:41:"Staphylococcus aureus subsp. aureus ST398";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"479212-479314";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"479544-480123";i:10;s:1:"+";i:11;s:3:"xpt";i:12;s:0:"";i:13;s:9:"SAPIG0465";i:14;s:6:"Operon";i:15;s:7:"1032716";i:16;s:50:"SAPIG0465(xpt);SAPIG0466;SAPIG0467(guaB);SAPIG0468";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017333.1";i:2;s:41:"Staphylococcus aureus subsp. aureus ST398";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"824398-824444";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"823559-824228";i:10;s:1:"-";i:11;s:9:"SAPIG0789";i:12;s:0:"";i:13;s:9:"SAPIG0789";i:14;s:6:"Operon";i:15;s:7:"1032781";i:16;s:35:"SAPIG0787(queE);SAPIG0788;SAPIG0789";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017333.1";i:2;s:41:"Staphylococcus aureus subsp. aureus ST398";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"932634-932737";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"932825-933851";i:10;s:1:"+";i:11;s:9:"SAPIG0892";i:12;s:0:"";i:13;s:9:"SAPIG0892";i:14;s:6:"Operon";i:15;s:7:"1032801";i:16;s:29:"SAPIG0892;SAPIG0893;SAPIG0894";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017333.1";i:2;s:41:"Staphylococcus aureus subsp. aureus ST398";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"974759-974849";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"975855-976233";i:10;s:1:"+";i:11;s:9:"SAPIG0938";i:12;s:0:"";i:13;s:9:"SAPIG0938";i:14;s:11:"Single gene";i:15;s:7:"3595600";i:16;s:9:"SAPIG0938";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017333.1";i:2;s:41:"Staphylococcus aureus subsp. aureus 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ST398";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1690669-1690766";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1689502-1690594";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:9:"SAPIG1602";i:14;s:6:"Operon";i:15;s:7:"1032942";i:16;s:35:"SAPIG1600;SAPIG1601;SAPIG1602(gcvT)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017333.1";i:2;s:41:"Staphylococcus aureus subsp. aureus ST398";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1820763-1820938";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1819124-1820618";i:10;s:1:"-";i:11;s:9:"SAPIG1736";i:12;s:0:"";i:13;s:9:"SAPIG1736";i:14;s:11:"Single gene";i:15;s:7:"3595875";i:16;s:9:"SAPIG1736";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017333.1";i:2;s:41:"Staphylococcus aureus subsp. aureus 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ST398";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2218243-2218345";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2217473-2218163";i:10;s:1:"-";i:11;s:4:"thiD";i:12;s:0:"";i:13;s:9:"SAPIG2137";i:14;s:6:"Operon";i:15;s:7:"1033047";i:16;s:51:"SAPIG2134(thiE);SAPIG2135;SAPIG2136(thiD);SAPIG2137";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_017333.1";i:2;s:41:"Staphylococcus aureus subsp. aureus ST398";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2286004-2286220";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2283996-2285802";i:10;s:1:"-";i:11;s:4:"glmS";i:12;s:0:"";i:13;s:9:"SAPIG2209";i:14;s:11:"Single gene";i:15;s:7:"3596062";i:16;s:15:"SAPIG2209(glmS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_017333.1";i:2;s:41:"Staphylococcus aureus subsp. aureus ST398";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2452917-2453012";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2451529-2452840";i:10;s:1:"-";i:11;s:9:"SAPIG2377";i:12;s:0:"";i:13;s:9:"SAPIG2377";i:14;s:11:"Single gene";i:15;s:7:"3596130";i:16;s:9:"SAPIG2377";i:17;s:0:"";i:18;s:15:"View Structure ";}}