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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15939-16037
(+)
SAM
16095-17064 (+)
SATW20_00120
SATW20_00120
Single gene
DOOR ID:
3594369
SATW20_00120
View Structure
2
481490-481592
(+)
purine
481822-482401 (+)
xpt
SATW20_04540
Operon
DOOR ID:
1032164
SATW20_04540
(xpt)
,
SATW20_04550
(pbuX)
,
SATW20_04560
(guaB)
,
SATW20_04570
(guaA)
View Structure
3
842443-842489
(-)
PreQ1
841604-842273 (-)
queC
SATW20_07870
Operon
DOOR ID:
1032241
SATW20_07840,
SATW20_07850,
SATW20_07860,
SATW20_07870
(queC)
View Structure
4
949384-949487
(+)
SAM
949575-950601 (+)
SATW20_08860
SATW20_08860
Operon
DOOR ID:
1032265
SATW20_08860,
SATW20_08870,
SATW20_08880
View Structure
5
1005465-1005555
(+)
preQ1-II
1006561-1006939 (+)
SATW20_09550
SATW20_09550
Single gene
DOOR ID:
3594597
SATW20_09550
View Structure
6
1082853-1082959
(+)
yybP-ykoY
1083034-1083838 (+)
SATW20_10180
SATW20_10180
Single gene
DOOR ID:
3594615
SATW20_10180
View Structure
7
1144638-1144738
(-)
TPP
1143985-1144561 (-)
ykoE
SATW20_10730
Operon
DOOR ID:
1032303
SATW20_10710
(ykoC)
,
SATW20_10720
(ykoD)
,
SATW20_10730
(ykoE)
View Structure
8
1490199-1490374
(+)
lysine
1490455-1491661 (+)
lysC
SATW20_13920
Operon
DOOR ID:
1032368
SATW20_13920
(lysC)
,
SATW20_13930
(asd)
,
SATW20_13940
(dapA)
,
SATW20_13950
(dapB)
,
SATW20_13960
(dapD)
,
SATW20_13970,
SATW20_13980
(dal)
,
SATW20_13990
(lysA)
View Structure
9
1615717-1615851
(-)
FMN
1615109-1615655 (-)
SATW20_14820
SATW20_14820
Single gene
DOOR ID:
3594734
SATW20_14820
View Structure
10
1666962-1667059
(-)
glycine
1665795-1666887 (-)
gcvT
SATW20_15330
Operon
DOOR ID:
1032401
SATW20_15310,
SATW20_15320,
SATW20_15330
(gcvT)
,
SATW20_15340
View Structure
11
1804475-1804650
(-)
lysine
1802836-1804330 (-)
lysP
SATW20_16720
Single gene
DOOR ID:
3594761
SATW20_16720
(lysP)
View Structure
12
1922129-1922264
(-)
FMN
1920958-1922002 (-)
ribD
SATW20_17610
Operon
DOOR ID:
1032444
SATW20_17580
(ribH)
,
SATW20_17590
(ribA)
,
SATW20_17600
(ribE)
,
SATW20_17610
(ribD)
View Structure
13
1938906-1939016
(-)
SAM
1937606-1938800 (-)
SATW20_17790
SATW20_17790
Operon
DOOR ID:
1032448
SATW20_17780,
SATW20_17790
View Structure
14
2367966-2368068
(-)
TPP
2367196-2367886 (-)
tenA
SATW20_22330
Operon
DOOR ID:
1032516
SATW20_22290,
SATW20_22300
(thiE)
,
SATW20_22310
(thiM)
,
SATW20_22320
(thiD)
,
SATW20_22330
(tenA)
View Structure
15
2424774-2424990
(-)
glmS
2422766-2424572 (-)
glmS
SATW20_22900
Single gene
DOOR ID:
3594895
SATW20_22900
(glmS)
View Structure
16
2597345-2597440
(-)
SAM
2595954-2597268 (-)
SATW20_24580
SATW20_24580
Operon
DOOR ID:
1032557
SATW20_24570,
SATW20_24580
View Structure
Genome:
Staphylococcus aureus subsp. aureus TW20
(
NC_017331.1
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017331.1";i:2;s:40:"Staphylococcus aureus subsp. aureus TW20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"15939-16037";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"16095-17064";i:10;s:1:"+";i:11;s:12:"SATW20_00120";i:12;s:0:"";i:13;s:12:"SATW20_00120";i:14;s:11:"Single gene";i:15;s:7:"3594369";i:16;s:12:"SATW20_00120";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017331.1";i:2;s:40:"Staphylococcus aureus subsp. aureus TW20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"481490-481592";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"481822-482401";i:10;s:1:"+";i:11;s:3:"xpt";i:12;s:0:"";i:13;s:12:"SATW20_04540";i:14;s:6:"Operon";i:15;s:7:"1032164";i:16;s:74:"SATW20_04540(xpt);SATW20_04550(pbuX);SATW20_04560(guaB);SATW20_04570(guaA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017331.1";i:2;s:40:"Staphylococcus aureus subsp. aureus TW20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"842443-842489";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"841604-842273";i:10;s:1:"-";i:11;s:4:"queC";i:12;s:0:"";i:13;s:12:"SATW20_07870";i:14;s:6:"Operon";i:15;s:7:"1032241";i:16;s:57:"SATW20_07840;SATW20_07850;SATW20_07860;SATW20_07870(queC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017331.1";i:2;s:40:"Staphylococcus aureus subsp. aureus 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TW20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1490199-1490374";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1490455-1491661";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:12:"SATW20_13920";i:14;s:6:"Operon";i:15;s:7:"1032368";i:16;s:143:"SATW20_13920(lysC);SATW20_13930(asd);SATW20_13940(dapA);SATW20_13950(dapB);SATW20_13960(dapD);SATW20_13970;SATW20_13980(dal);SATW20_13990(lysA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017331.1";i:2;s:40:"Staphylococcus aureus subsp. aureus TW20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1615717-1615851";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1615109-1615655";i:10;s:1:"-";i:11;s:12:"SATW20_14820";i:12;s:0:"";i:13;s:12:"SATW20_14820";i:14;s:11:"Single gene";i:15;s:7:"3594734";i:16;s:12:"SATW20_14820";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017331.1";i:2;s:40:"Staphylococcus aureus subsp. aureus TW20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1666962-1667059";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1665795-1666887";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:12:"SATW20_15330";i:14;s:6:"Operon";i:15;s:7:"1032401";i:16;s:57:"SATW20_15310;SATW20_15320;SATW20_15330(gcvT);SATW20_15340";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017331.1";i:2;s:40:"Staphylococcus aureus subsp. aureus TW20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1804475-1804650";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1802836-1804330";i:10;s:1:"-";i:11;s:4:"lysP";i:12;s:0:"";i:13;s:12:"SATW20_16720";i:14;s:11:"Single gene";i:15;s:7:"3594761";i:16;s:18:"SATW20_16720(lysP)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017331.1";i:2;s:40:"Staphylococcus aureus subsp. aureus TW20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1922129-1922264";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1920958-1922002";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:12:"SATW20_17610";i:14;s:6:"Operon";i:15;s:7:"1032444";i:16;s:75:"SATW20_17580(ribH);SATW20_17590(ribA);SATW20_17600(ribE);SATW20_17610(ribD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017331.1";i:2;s:40:"Staphylococcus aureus subsp. aureus TW20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1938906-1939016";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1937606-1938800";i:10;s:1:"-";i:11;s:12:"SATW20_17790";i:12;s:0:"";i:13;s:12:"SATW20_17790";i:14;s:6:"Operon";i:15;s:7:"1032448";i:16;s:25:"SATW20_17780;SATW20_17790";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017331.1";i:2;s:40:"Staphylococcus aureus subsp. aureus TW20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2367966-2368068";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2367196-2367886";i:10;s:1:"-";i:11;s:4:"tenA";i:12;s:0:"";i:13;s:12:"SATW20_22330";i:14;s:6:"Operon";i:15;s:7:"1032516";i:16;s:88:"SATW20_22290;SATW20_22300(thiE);SATW20_22310(thiM);SATW20_22320(thiD);SATW20_22330(tenA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_017331.1";i:2;s:40:"Staphylococcus aureus subsp. aureus TW20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2424774-2424990";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2422766-2424572";i:10;s:1:"-";i:11;s:4:"glmS";i:12;s:0:"";i:13;s:12:"SATW20_22900";i:14;s:11:"Single gene";i:15;s:7:"3594895";i:16;s:18:"SATW20_22900(glmS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_017331.1";i:2;s:40:"Staphylococcus aureus subsp. aureus TW20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2597345-2597440";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2595954-2597268";i:10;s:1:"-";i:11;s:12:"SATW20_24580";i:12;s:0:"";i:13;s:12:"SATW20_24580";i:14;s:6:"Operon";i:15;s:7:"1032557";i:16;s:25:"SATW20_24570;SATW20_24580";i:17;s:0:"";i:18;s:15:"View Structure ";}}