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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
160159-160237
(-)
sam-alpha
158930-160115 (-)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
SM11_chr0148
Single gene
DOOR ID:
3589829
SM11_chr0148
(metZ)
View Structure
2
555273-555476
(+)
cobalamin
555517-556834 (+)
SM11_chr0525
Putative dioxygenase Rieske 2Fe-2S family protein
SM11_chr0525
Operon
DOOR ID:
1030532
SM11_chr0525,
SM11_chr0526
View Structure
3
1072253-1072417
(-)
FMN
1071688-1072216 (-)
ribH2
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
SM11_chr1038
Single gene
DOOR ID:
3590225
SM11_chr1038
(ribH2)
View Structure
4
1393152-1393567
(+)
cobalamin
1393685-1394213 (+)
cobP
Bifunctional adenosylcobalamin biosynthesis protein (2)
SM11_chr1371
Operon
DOOR ID:
1030689
SM11_chr1371
(cobP)
,
SM11_chr1372
(cobW)
,
SM11_chr1373
(cobN)
,
SM11_chr1374
(cobO)
View Structure
5
1564420-1564633
(+)
cobalamin
1564677-1565361 (+)
bluB
NADH/FMN-dependent nitroreductase
SM11_chr1558
Single gene
DOOR ID:
3590462
SM11_chr1558
(bluB)
View Structure
6
1993957-1994044
(+)
glycine
1994186-1995326 (+)
gcvT
Glycine cleavage system aminomethyltransferase T
SM11_chr2017
Operon
DOOR ID:
1030800
SM11_chr2017
(gcvT)
,
SM11_chr2018
(gcvH)
,
SM11_chr2019
(gcvP)
View Structure
7
3316401-3316478
(+)
sam-alpha
3317549-3318566 (+)
galM
Aldose 1-epimerase (Galactose mutarotase)
SM11_chr3306
Operon
DOOR ID:
1031041
SM11_chr3305
(metA)
,
SM11_chr3306
(galM)
View Structure
8
3388804-3388917
(+)
TPP
3388965-3389994 (+)
thiB
Thiamine-binding periplasmic protein
SM11_chr3380
Operon
DOOR ID:
1031059
SM11_chr3380
(thiB)
,
SM11_chr3381
(thiP)
,
SM11_chr3382
(thiQ)
View Structure
Genome:
Sinorhizobium meliloti SM11
(
NC_017325.1
);
Phylum:
Alphaproteobacteria
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