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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15645-15877
(-)
cobalamin
13190-15548 (-)
Deval_0013
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Deval_0013
Single gene
DOOR ID:
3583590
Deval_0013
View Structure
2
726195-726376
(-)
cobalamin
725165-726059 (-)
Deval_0595
Sirohydrochlorin cobaltochelatase
Deval_0595
Operon
DOOR ID:
1254109
Deval_0595,
Deval_0594,
Deval_0593,
Deval_0592,
Deval_0591
View Structure
3
812636-812731
(-)
glycine
811087-812629 (-)
Deval_0666
Amino acid carrier protein
Deval_0666
Single gene
DOOR ID:
3583838
Deval_0666
View Structure
4
1267716-1267837
(-)
SAM
1267277-1267544 (-)
Deval_1082
Deval_1082
Single gene
DOOR ID:
3583966
Deval_1082
View Structure
5
1742441-1742588
(+)
FMN
1742682-1743327 (+)
Deval_1524
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Deval_1524
Single gene
DOOR ID:
3584117
Deval_1524
View Structure
6
2188125-2188225
(-)
TPP
2187768-2187969 (-)
Deval_1947
Thiamine biosynthesis protein ThiS
Deval_1947
Operon
DOOR ID:
1254390
Deval_1944,
Deval_1945,
Deval_1946,
Deval_1947
View Structure
7
2188291-2188391
(-)
TPP
2187768-2187969 (-)
Deval_1947
Thiamine biosynthesis protein ThiS
Deval_1947
Operon
DOOR ID:
1254390
Deval_1944,
Deval_1945,
Deval_1946,
Deval_1947
View Structure
8
3056103-3056279
(-)
cobalamin
3053880-3055950 (-)
Deval_2722
Anaerobic ribonucleoside-triphosphate reductase
Deval_2722
Single gene
DOOR ID:
3584508
Deval_2722
View Structure
Genome:
Desulfovibrio vulgaris RCH1
(
NC_017310.1
);
Phylum:
delta/epsilon subdivisions
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