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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
16608-16710
(+)
yybP-ykoY
16823-17348 (+)
ETAF_0016
Predicted membrane protein
ETAF_0016
Single gene
DOOR ID:
3582015
ETAF_0016
View Structure
2
175538-175653
(-)
TPP
173495-175427 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ETAF_0151
Operon
DOOR ID:
1253428
ETAF_0150,
ETAF_0151
(thiC)
View Structure
3
356577-356621
(+)
mini-ykkC
356656-356959 (+)
sugE
ETAF_0288
Single gene
DOOR ID:
3582127
ETAF_0288
(sugE)
View Structure
4
454728-454875
(-)
fluoride
454235-454625 (-)
ETAF_0386
Putative fluoride ion transporter CrcB
ETAF_0386
Single gene
DOOR ID:
3582170
ETAF_0386
View Structure
5
499153-499309
(+)
FMN
500148-500916 (-)
zupT
Zinc transporter ZupT
ETAF_0426
Single gene
DOOR ID:
3582195
ETAF_0426
(zupT)
View Structure
6
653586-653685
(-)
TPP
652549-653545 (-)
ETAF_0556
Thiamin ABC transporter; substrate-binding component
ETAF_0556
Operon
DOOR ID:
1253519
ETAF_0554
(thiQ)
,
ETAF_0555,
ETAF_0556
View Structure
7
1143751-1143847
(+)
TPP
1143881-1144685 (+)
ETAF_0986
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
ETAF_0986
Operon
DOOR ID:
1253594
ETAF_0986,
ETAF_0987
View Structure
8
1910492-1910672
(-)
cobalamin
1908762-1910304 (-)
ETAF_1667
Cobyric acid synthase
ETAF_1667
Operon
DOOR ID:
1253701
ETAF_1666,
ETAF_1667
View Structure
9
2065678-2065853
(-)
cobalamin
2064201-2065581 (-)
ETAF_1813
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
ETAF_1813
Operon
DOOR ID:
1253721
ETAF_1808,
ETAF_1809,
ETAF_1810,
ETAF_1811,
ETAF_1812,
ETAF_1813
View Structure
10
2392908-2392983
(-)
fluoride
2391927-2392818 (-)
ETAF_2096
Manganese-dependent inorganic pyrophosphatase
ETAF_2096
Operon
DOOR ID:
1253774
ETAF_2095,
ETAF_2096
View Structure
11
2422306-2422448
(-)
MOCO
2420805-2421291 (-)
ETAF_2118
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
ETAF_2118
Operon
DOOR ID:
1253778
ETAF_2116,
ETAF_2117,
ETAF_2118,
ETAF_2119
View Structure
Genome:
Edwardsiella tarda FL6-60
(
NC_017309.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017309.1";i:2;s:26:"Edwardsiella tarda FL6-60 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"356577-356621";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"356656-356959";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:9:"ETAF_0288";i:14;s:11:"Single gene";i:15;s:7:"3582127";i:16;s:15:"ETAF_0288(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017309.1";i:2;s:26:"Edwardsiella tarda FL6-60 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"454728-454875";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"454235-454625";i:10;s:1:"-";i:11;s:9:"ETAF_0386";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"ETAF_0386";i:14;s:11:"Single gene";i:15;s:7:"3582170";i:16;s:9:"ETAF_0386";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017309.1";i:2;s:26:"Edwardsiella tarda FL6-60 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"499153-499309";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"500148-500916";i:10;s:1:"-";i:11;s:4:"zupT";i:12;s:21:"Zinc transporter ZupT";i:13;s:9:"ETAF_0426";i:14;s:11:"Single gene";i:15;s:7:"3582195";i:16;s:15:"ETAF_0426(zupT)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017309.1";i:2;s:26:"Edwardsiella tarda FL6-60 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"653586-653685";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"652549-653545";i:10;s:1:"-";i:11;s:9:"ETAF_0556";i:12;s:52:"Thiamin ABC transporter; substrate-binding component";i:13;s:9:"ETAF_0556";i:14;s:6:"Operon";i:15;s:7:"1253519";i:16;s:35:"ETAF_0554(thiQ);ETAF_0555;ETAF_0556";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017309.1";i:2;s:26:"Edwardsiella tarda FL6-60 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1143751-1143847";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1143881-1144685";i:10;s:1:"+";i:11;s:9:"ETAF_0986";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"ETAF_0986";i:14;s:6:"Operon";i:15;s:7:"1253594";i:16;s:19:"ETAF_0986;ETAF_0987";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017309.1";i:2;s:26:"Edwardsiella tarda FL6-60 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1910492-1910672";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1908762-1910304";i:10;s:1:"-";i:11;s:9:"ETAF_1667";i:12;s:21:"Cobyric acid synthase";i:13;s:9:"ETAF_1667";i:14;s:6:"Operon";i:15;s:7:"1253701";i:16;s:19:"ETAF_1666;ETAF_1667";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017309.1";i:2;s:26:"Edwardsiella tarda FL6-60 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2065678-2065853";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2064201-2065581";i:10;s:1:"-";i:11;s:9:"ETAF_1813";i:12;s:75:"Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)";i:13;s:9:"ETAF_1813";i:14;s:6:"Operon";i:15;s:7:"1253721";i:16;s:59:"ETAF_1808;ETAF_1809;ETAF_1810;ETAF_1811;ETAF_1812;ETAF_1813";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017309.1";i:2;s:26:"Edwardsiella tarda FL6-60 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2392908-2392983";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2391927-2392818";i:10;s:1:"-";i:11;s:9:"ETAF_2096";i:12;s:46:"Manganese-dependent inorganic pyrophosphatase ";i:13;s:9:"ETAF_2096";i:14;s:6:"Operon";i:15;s:7:"1253774";i:16;s:19:"ETAF_2095;ETAF_2096";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017309.1";i:2;s:26:"Edwardsiella tarda FL6-60 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2422306-2422448";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2420805-2421291";i:10;s:1:"-";i:11;s:9:"ETAF_2118";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:9:"ETAF_2118";i:14;s:6:"Operon";i:15;s:7:"1253778";i:16;s:39:"ETAF_2116;ETAF_2117;ETAF_2118;ETAF_2119";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}}
