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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
205388-205559
(-)
yybP-ykoY
204147-204372 (+)
XCR_0174
XCR_0174
Single gene
DOOR ID:
3559369
XCR_0174
View Structure
2
898234-898402
(+)
FMN
898414-899173 (+)
ribE
Riboflavin synthase; alpha subunit
XCR_0859
Operon
DOOR ID:
1018416
XCR_0859
(ribE)
,
XCR_0860,
XCR_0861
(ribH)
,
XCR_0862
(nusB)
,
XCR_0863
(thiL)
View Structure
3
966017-966131
(-)
SAH
964543-965986 (-)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
XCR_0927
Single gene
DOOR ID:
3559693
XCR_0927
(ahcY)
View Structure
4
1362341-1362455
(-)
glycine
1359313-1362241 (-)
gcvP
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
XCR_1334
Single gene
DOOR ID:
3559843
XCR_1334
(gcvP)
View Structure
5
2345557-2345627
(+)
fluoride
2345751-2346141 (+)
XCR_2256
Putative fluoride ion transporter CrcB
XCR_2256
Single gene
DOOR ID:
3560190
XCR_2256
View Structure
6
3408818-3408938
(-)
SAM
3407714-3408737 (-)
XCR_3234
Homoserine O-succinyltransferase (HST) (6) (Homoserine transsuccinylase) (HTS)
XCR_3234
Operon
DOOR ID:
1018904
XCR_3232,
XCR_3233
(metB)
,
XCR_3234
View Structure
7
3607814-3608037
(-)
cobalamin
3605821-3607726 (-)
btuB
TonB-dependent vitamin B12 receptor
XCR_3405
Single gene
DOOR ID:
3560638
XCR_3405
(btuB)
View Structure
8
3891864-3891962
(-)
TPP
3889871-3891749 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
XCR_3649
Single gene
DOOR ID:
3560744
XCR_3649
(thiC)
View Structure
Genome:
Xanthomonas campestris pv. raphani 756C
(
NC_017271.1
);
Phylum:
Gammaproteobacteria
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