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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
363383-363546
(-)
yybP-ykoY
359079-362595 (+)
XOC_0359
Two-component system sensor-response regulator hybrid protein
XOC_0359
Single gene
DOOR ID:
3553446
XOC_0359
View Structure
2
813046-813221
(+)
FMN
813388-813991 (+)
ribE
Riboflavin synthase; alpha subunit
XOC_0813
Single gene
DOOR ID:
3553869
XOC_0813
(ribE)
View Structure
3
877993-878107
(-)
SAH
876517-877960 (-)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
XOC_0870
Single gene
DOOR ID:
3553926
XOC_0870
(ahcY)
View Structure
4
1251086-1251200
(-)
glycine
1248082-1250986 (-)
gcvP
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
XOC_1274
Single gene
DOOR ID:
3554311
XOC_1274
(gcvP)
View Structure
5
2446793-2446869
(-)
fluoride
2445374-2446706 (-)
XOC_2422
Cl-channel; voltage gated
XOC_2422
Single gene
DOOR ID:
3555406
XOC_2422
View Structure
6
3290404-3290523
(-)
SAM
3289301-3290324 (-)
XOC_3219
Homoserine O-succinyltransferase (HST) (6) (Homoserine transsuccinylase) (HTS)
XOC_3219
Single gene
DOOR ID:
3556165
XOC_3219
View Structure
7
3495301-3495527
(-)
cobalamin
3493306-3495184 (-)
btuB
TonB-dependent vitamin B12 receptor
XOC_3401
Single gene
DOOR ID:
3556346
XOC_3401
(btuB)
View Structure
8
3823485-3823582
(-)
TPP
3821515-3823393 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
XOC_3712
Single gene
DOOR ID:
3556653
XOC_3712
(thiC)
View Structure
Genome:
Xanthomonas oryzae pv. oryzicola BLS256
(
NC_017267.1
);
Phylum:
Gammaproteobacteria
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