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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
285939-286201
(+)
cobalamin
286287-288165 (+)
btuB
YPC_0305
Operon
DOOR ID:
1250699
YPC_0306
(murI)
,
YPC_0305
(btuB)
View Structure
2
488680-488805
(-)
TPP
486500-488546 (-)
thiC
YPC_0514
Single gene
DOOR ID:
3551379
YPC_0514
(thiC)
View Structure
3
630557-630603
(-)
mini-ykkC
630222-630537 (-)
sugE
YPC_0646
Single gene
DOOR ID:
3551436
YPC_0646
(sugE)
View Structure
4
1206086-1206232
(+)
MOCO
1207299-1207779 (+)
moaC
YPC_1217
Operon
DOOR ID:
1250866
YPC_1219
(moaE)
,
YPC_1218
(moaD)
,
YPC_1217
(moaC)
,
YPC_1216
(moaA)
View Structure
5
1242036-1242140
(+)
TPP
1242263-1243064 (+)
thiD
YPC_1261
Single gene
DOOR ID:
3551663
YPC_1261
(thiD)
View Structure
6
2436931-2437130
(+)
yybP-ykoY
2437140-2437710 (+)
yebN
YPC_2528
Single gene
DOOR ID:
3552222
YPC_2528
(yebN)
View Structure
7
3154946-3155009
(+)
fluoride
3155109-3155493 (+)
crcB
YPC_3280
Single gene
DOOR ID:
3552560
YPC_3280
(crcB)
View Structure
8
3770000-3770189
(-)
FMN
3769104-3769758 (-)
ribB
YPC_3918
Operon
DOOR ID:
1251339
YPC_3918
(ribB)
,
YPC_3917
View Structure
9
3904542-3904679
(-)
TPP
3903474-3904467 (-)
tbpA
YPC_4036
Operon
DOOR ID:
1251356
YPC_4036
(tbpA)
,
YPC_4035
(thiP)
,
YPC_4034
(thiQ)
View Structure
Genome:
Yersinia pestis biovar Medievalis str. Harbin 35
(
NC_017265.1
);
Phylum:
Gammaproteobacteria
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