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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
172596-172692
(+)
TPP
172737-172902 (+)
HMPREF9228_0130
HMPREF9228_0130
Operon
DOOR ID:
1013148
HMPREF9228_0130,
HMPREF9228_0131
View Structure
2
503307-503463
(-)
ykoK
501208-502999 (-)
HMPREF9228_0422
HMPREF9228_0422
Operon
DOOR ID:
1013204
HMPREF9228_0421,
HMPREF9228_0422
View Structure
3
643407-643559
(-)
FMN
642744-643401 (-)
HMPREF9228_0541
HMPREF9228_0541
Operon
DOOR ID:
1013226
HMPREF9228_0539,
HMPREF9228_0540,
HMPREF9228_0541
View Structure
4
664403-664511
(-)
TPP
663468-664311 (-)
HMPREF9228_0558
HMPREF9228_0558
Single gene
DOOR ID:
3534653
HMPREF9228_0558
View Structure
5
1044462-1044630
(-)
TPP
1043506-1043728 (-)
HMPREF9228_0902
HMPREF9228_0902
Single gene
DOOR ID:
3534746
HMPREF9228_0902
View Structure
6
1355263-1355370
(-)
TPP
1354599-1355199 (-)
HMPREF9228_1190
HMPREF9228_1190
Single gene
DOOR ID:
3535009
HMPREF9228_1190
View Structure
7
1454998-1455067
(+)
fluoride
1455129-1455666 (+)
HMPREF9228_1275
HMPREF9228_1275
Single gene
DOOR ID:
3535087
HMPREF9228_1275
View Structure
Genome:
Bifidobacterium breve ACS-071-V-Sch8b
(
NC_017218.1
);
Phylum:
Actinobacteria
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