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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
166758-166913
(+)
glmS
167105-168908 (+)
glmS
CT43_CH0156
Single gene
DOOR ID:
3529286
CT43_CH0156
(glmS)
View Structure
2
177705-177819
(-)
SAM
176806-177619 (-)
CT43_CH0164
CT43_CH0164
Operon
DOOR ID:
1248042
CT43_CH0164,
CT43_CH0163,
CT43_CH0162
View Structure
3
186596-186701
(+)
SAM
186837-187755 (+)
CT43_CH0174
CT43_CH0174
Operon
DOOR ID:
1248044
CT43_CH0178,
CT43_CH0177,
CT43_CH0176,
CT43_CH0175,
CT43_CH0174
View Structure
4
196884-196988
(-)
SAM
195110-196751 (-)
CT43_CH0182
CT43_CH0182
Single gene
DOOR ID:
3529300
CT43_CH0182
View Structure
5
264901-265002
(+)
purine
265166-266705 (+)
guaA
CT43_CH0245
Single gene
DOOR ID:
3529329
CT43_CH0245
(guaA)
View Structure
6
266863-266964
(+)
purine
267092-268418 (+)
CT43_CH0246
CT43_CH0246
Single gene
DOOR ID:
3529330
CT43_CH0246
View Structure
7
307128-307229
(+)
purine
307339-307825 (+)
purE
CT43_CH0264
Operon
DOOR ID:
1248061
CT43_CH0274
(purH)
,
CT43_CH0273
(purN)
,
CT43_CH0272
(purM)
,
CT43_CH0271
(purF)
,
CT43_CH0270
(purL)
,
CT43_CH0269
(purQ)
,
CT43_CH0268,
CT43_CH0267
(purC)
,
CT43_CH0266
(purB_2)
,
CT43_CH0265
(purK)
,
CT43_CH0264
(purE)
View Structure
8
334435-334540
(+)
SAM
334663-335683 (+)
CT43_CH0288
CT43_CH0288
Operon
DOOR ID:
1248064
CT43_CH0290,
CT43_CH0289,
CT43_CH0288
View Structure
9
356609-356710
(-)
purine
355209-356406 (-)
CT43_CH0309
CT43_CH0309
Single gene
DOOR ID:
3529358
CT43_CH0309
View Structure
10
386366-386478
(-)
SAM
385647-386280 (-)
CT43_CH0338
CT43_CH0338
Single gene
DOOR ID:
3529373
CT43_CH0338
View Structure
11
417937-418049
(+)
TPP
418121-418949 (+)
thiM
CT43_CH0362
Operon
DOOR ID:
1248076
CT43_CH0363
(thiE)
,
CT43_CH0362
(thiM)
View Structure
12
421335-421419
(+)
c-di-GMP-I
421553-423296 (+)
CT43_CH0365
CT43_CH0365
single gene
DOOR ID:
3529391
CT43_CH0365
View Structure
13
427068-427169
(+)
TPP
427270-427591 (+)
CT43_CH0367
CT43_CH0367
Operon
DOOR ID:
1248077
CT43_CH0370,
CT43_CH0369,
CT43_CH0368,
CT43_CH0367
View Structure
14
792983-793094
(+)
TPP
793343-794039 (+)
CT43_CH0703
CT43_CH0703
Operon
DOOR ID:
1248140
CT43_CH0703,
CT43_CH0704,
CT43_CH0705,
CT43_CH0706
View Structure
15
793155-793258
(+)
TPP
793343-794039 (+)
CT43_CH0703
CT43_CH0703
Operon
DOOR ID:
1248140
CT43_CH0703,
CT43_CH0704,
CT43_CH0705,
CT43_CH0706
View Structure
16
801157-801304
(+)
ydaO-yuaA
801397-802030 (+)
CT43_CH0713
CT43_CH0713
Single gene
DOOR ID:
3529551
CT43_CH0713
View Structure
17
802292-802437
(+)
ydaO-yuaA
802500-802638 (+)
CT43_CH0714
CT43_CH0714
Single gene
DOOR ID:
3529552
CT43_CH0714
View Structure
18
896827-897008
(-)
lysine
895255-896680 (-)
CT43_CH0818
CT43_CH0818
Operon
DOOR ID:
1248164
CT43_CH0817,
CT43_CH0818
View Structure
19
1087308-1087400
(+)
c-di-GMP-I
1087459-1093729 (+)
CT43_CH1013
CT43_CH1013
single gene
DOOR ID:
3529715
CT43_CH1013
View Structure
20
1314626-1314790
(-)
yybP-ykoY
1313739-1314534 (-)
CT43_CH1240
CT43_CH1240
Single gene
DOOR ID:
3529830
CT43_CH1240
View Structure
21
1344689-1344732
(+)
PreQ1
1344825-1345488 (+)
CT43_CH1272
CT43_CH1272
Operon
DOOR ID:
1248240
CT43_CH1272,
CT43_CH1273,
CT43_CH1274,
CT43_CH1275
(queF)
View Structure
22
1405830-1406011
(+)
lysine
1406191-1407508 (+)
lysA
CT43_CH1348
Single gene
DOOR ID:
3529882
CT43_CH1348
(lysA)
View Structure
23
1407624-1407732
(+)
SAM
1407804-1407948 (+)
CT43_CH1349
CT43_CH1349
Single gene
DOOR ID:
3529883
CT43_CH1349
View Structure
24
1420548-1420653
(+)
SAM
1420747-1422064 (+)
CT43_CH1363
CT43_CH1363
Single gene
DOOR ID:
3529888
CT43_CH1363
View Structure
25
1465369-1465508
(+)
FMN
1465670-1466249 (+)
CT43_CH1409
CT43_CH1409
Single gene
DOOR ID:
3529917
CT43_CH1409
View Structure
26
1539087-1539188
(+)
purine
1539296-1539890 (+)
xpt
CT43_CH1493
Operon
DOOR ID:
1248278
CT43_CH1493
(xpt)
,
CT43_CH1494
(pbuX)
View Structure
27
1551770-1551933
(+)
ykoK
1552261-1552987 (+)
CT43_CH1506
CT43_CH1506
Single gene
DOOR ID:
3529954
CT43_CH1506
View Structure
28
1583849-1583893
(+)
PreQ1
1583899-1584385 (+)
CT43_CH1525
CT43_CH1525
Single gene
DOOR ID:
3529963
CT43_CH1525
View Structure
29
1726791-1726977
(-)
lysine
1725358-1726588 (-)
dapG1
CT43_CH1684
Single gene
DOOR ID:
3530022
CT43_CH1684
(dapG1)
View Structure
30
1785632-1785778
(+)
ydaO-yuaA
1785922-1787749 (+)
CT43_CH1741
CT43_CH1741
Single gene
DOOR ID:
3530053
CT43_CH1741
View Structure
31
2301646-2301766
(-)
glycine
2300171-2301539 (-)
CT43_CH2278
CT43_CH2278
Single gene
DOOR ID:
3530298
CT43_CH2278
View Structure
32
2593620-2593725
(+)
TPP
2593852-2594542 (+)
tenA
CT43_CH2541
Single gene
DOOR ID:
3530451
CT43_CH2541
(tenA)
View Structure
33
2662600-2662715
(+)
SAM
2662855-2663404 (+)
CT43_CH2623
CT43_CH2623
Operon
DOOR ID:
1248474
CT43_CH2623,
CT43_CH2624,
CT43_CH2625
View Structure
34
2826586-2826647
(-)
fluoride
2826039-2826156 (-)
CT43_CH2800
CT43_CH2800
Single gene
DOOR ID:
3530586
CT43_CH2800
View Structure
35
3051666-3051859
(+)
lysine
3051971-3053438 (+)
lysP
CT43_CH3041
Single gene
DOOR ID:
3530712
CT43_CH3041
(lysP)
View Structure
36
3142182-3142283
(-)
SAM
3140887-3142093 (-)
CT43_CH3132
CT43_CH3132
Single gene
DOOR ID:
3530766
CT43_CH3132
View Structure
37
3241999-3242097
(-)
SAM
3241640-3241898 (-)
CT43_CH3224
CT43_CH3224
Single gene
DOOR ID:
3530827
CT43_CH3224
View Structure
38
3254922-3255025
(-)
purine
3253878-3254757 (-)
CT43_CH3236
CT43_CH3236
Single gene
DOOR ID:
3530836
CT43_CH3236
View Structure
39
3287656-3287798
(+)
ydaO-yuaA
3287894-3288038 (+)
CT43_CH3275
CT43_CH3275
Single gene
DOOR ID:
3530863
CT43_CH3275
View Structure
40
3498657-3498765
(-)
SAM
3497918-3498587 (-)
CT43_CH3476
CT43_CH3476
Operon
DOOR ID:
1248611
CT43_CH3473,
CT43_CH3474,
CT43_CH3475,
CT43_CH3476
View Structure
41
3763268-3763369
(-)
purine
3762308-3763034 (-)
CT43_CH3735
CT43_CH3735
Single gene
DOOR ID:
3531125
CT43_CH3735
View Structure
42
4020787-4020975
(+)
cobalamin
4021102-4023391 (+)
metE
CT43_CH4008
Single gene
DOOR ID:
3531225
CT43_CH4008
(metE)
View Structure
43
4051551-4051692
(-)
SAM
4050278-4051460 (-)
mtnK
CT43_CH4039
Operon
DOOR ID:
1248716
CT43_CH4038
(mtnA)
,
CT43_CH4039
(mtnK)
View Structure
44
4053885-4053990
(+)
SAM
4054055-4055300 (+)
mtnW
CT43_CH4042
Operon
DOOR ID:
1248717
CT43_CH4042
(mtnW)
,
CT43_CH4043
(mtnX)
,
CT43_CH4044
(mtnB)
,
CT43_CH4045
View Structure
45
4116719-4116862
(+)
FMN
4117167-4118280 (+)
ribD
CT43_CH4117
Operon
DOOR ID:
1248728
CT43_CH4117
(ribD)
,
CT43_CH4118
(ribE)
,
CT43_CH4119
(ribBA)
,
CT43_CH4120
(ribH)
View Structure
46
4152250-4152417
(+)
ykoK
4152748-4155454 (+)
mgtA
CT43_CH4157
Single gene
DOOR ID:
3531300
CT43_CH4157
(mgtA)
View Structure
47
4249021-4249131
(-)
SAM
4247117-4248950 (-)
CT43_CH4271
CT43_CH4271
Operon
DOOR ID:
1248756
CT43_CH4269
(murG2)
,
CT43_CH4270
(metH)
,
CT43_CH4271
View Structure
48
4249335-4249445
(+)
SAM
4249539-4250652 (+)
metI
CT43_CH4272
Operon
DOOR ID:
1248757
CT43_CH4272
(metI)
,
CT43_CH4273
View Structure
49
4740829-4740950
(-)
SAM
4739459-4740659 (-)
metK
CT43_CH4787
Single gene
DOOR ID:
3531571
CT43_CH4787
(metK)
View Structure
50
4752941-4753029
(-)
c-di-GMP-I
4750202-4752788 (-)
CT43_CH4799
CT43_CH4799
operon
DOOR ID:
1248866
CT43_CH4796,
CT43_CH4797,
CT43_CH4798,
CT43_CH4799
View Structure
51
4753101-4753189
(-)
c-di-GMP-I
4750202-4752788 (-)
CT43_CH4799
CT43_CH4799
operon
DOOR ID:
1248866
CT43_CH4796,
CT43_CH4797,
CT43_CH4798,
CT43_CH4799
View Structure
52
4787090-4787191
(+)
TPP
4787277-4787949 (+)
CT43_CH4837
CT43_CH4837
Single gene
DOOR ID:
3531592
CT43_CH4837
View Structure
53
4991019-4991126
(-)
SAM
4989814-4990840 (-)
CT43_CH5045
CT43_CH5045
Operon
DOOR ID:
1248918
CT43_CH5042,
CT43_CH5043,
CT43_CH5044,
CT43_CH5045
View Structure
54
5079696-5079755
(+)
fluoride
5079809-5080214 (+)
CT43_CH5137
CT43_CH5137
Operon
DOOR ID:
1248936
CT43_CH5137,
CT43_CH5138
View Structure
55
5196239-5196354
(-)
TPP
5194364-5196125 (-)
thiC
CT43_CH5254
Single gene
DOOR ID:
3531785
CT43_CH5254
(thiC)
View Structure
56
5396565-5396669
(-)
SAM
5395173-5396472 (-)
CT43_CH5446
CT43_CH5446
Operon
DOOR ID:
1248993
CT43_CH5445
(metA)
,
CT43_CH5446
View Structure
Genome:
Bacillus thuringiensis serovar chinensis CT-43
(
NC_017208.1
);
Phylum:
Firmicutes
a:57:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017208.1";i:2;s:47:"Bacillus thuringiensis serovar chinensis CT-43 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"166758-166913";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"167105-168908";i:10;s:1:"+";i:11;s:4:"glmS";i:12;s:0:"";i:13;s:11:"CT43_CH0156";i:14;s:11:"Single gene";i:15;s:7:"3529286";i:16;s:17:"CT43_CH0156(glmS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017208.1";i:2;s:47:"Bacillus thuringiensis serovar chinensis CT-43 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"177705-177819";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"176806-177619";i:10;s:1:"-";i:11;s:11:"CT43_CH0164";i:12;s:0:"";i:13;s:11:"CT43_CH0164";i:14;s:6:"Operon";i:15;s:7:"1248042";i:16;s:35:"CT43_CH0164;CT43_CH0163;CT43_CH0162";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017208.1";i:2;s:47:"Bacillus thuringiensis serovar chinensis CT-43 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"186596-186701";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"186837-187755";i:10;s:1:"+";i:11;s:11:"CT43_CH0174";i:12;s:0:"";i:13;s:11:"CT43_CH0174";i:14;s:6:"Operon";i:15;s:7:"1248044";i:16;s:59:"CT43_CH0178;CT43_CH0177;CT43_CH0176;CT43_CH0175;CT43_CH0174";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017208.1";i:2;s:47:"Bacillus thuringiensis serovar chinensis CT-43 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"196884-196988";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"195110-196751";i:10;s:1:"-";i:11;s:11:"CT43_CH0182";i:12;s:0:"";i:13;s:11:"CT43_CH0182";i:14;s:11:"Single gene";i:15;s:7:"3529300";i:16;s:11:"CT43_CH0182";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017208.1";i:2;s:47:"Bacillus thuringiensis serovar chinensis CT-43 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"264901-265002";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"265166-266705";i:10;s:1:"+";i:11;s:4:"guaA";i:12;s:0:"";i:13;s:11:"CT43_CH0245";i:14;s:11:"Single gene";i:15;s:7:"3529329";i:16;s:17:"CT43_CH0245(guaA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017208.1";i:2;s:47:"Bacillus thuringiensis serovar chinensis CT-43 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"266863-266964";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"267092-268418";i:10;s:1:"+";i:11;s:11:"CT43_CH0246";i:12;s:0:"";i:13;s:11:"CT43_CH0246";i:14;s:11:"Single gene";i:15;s:7:"3529330";i:16;s:11:"CT43_CH0246";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017208.1";i:2;s:47:"Bacillus thuringiensis serovar chinensis CT-43 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"307128-307229";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"307339-307825";i:10;s:1:"+";i:11;s:4:"purE";i:12;s:0:"";i:13;s:11:"CT43_CH0264";i:14;s:6:"Operon";i:15;s:7:"1248061";i:16;s:193:"CT43_CH0274(purH);CT43_CH0273(purN);CT43_CH0272(purM);CT43_CH0271(purF);CT43_CH0270(purL);CT43_CH0269(purQ);CT43_CH0268;CT43_CH0267(purC);CT43_CH0266(purB_2);CT43_CH0265(purK);CT43_CH0264(purE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017208.1";i:2;s:47:"Bacillus thuringiensis serovar chinensis CT-43 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