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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
188696-188867
(+)
glmS
188956-190759 (+)
glmS
BAXH7_00188
Operon
DOOR ID:
1010031
BAXH7_00187,
BAXH7_00188
(glmS)
View Structure
2
425016-425162
(+)
ydaO-yuaA
425318-427139 (+)
ydaO
BAXH7_00420
Single gene
DOOR ID:
3522667
BAXH7_00420
(ydaO)
View Structure
3
540235-540334
(-)
purine
539018-540179 (-)
pbuE
BAXH7_00563
Single gene
DOOR ID:
3522741
BAXH7_00563
(pbuE)
View Structure
4
603564-603665
(+)
purine
603795-605118 (+)
pbuG
BAXH7_00621
Single gene
DOOR ID:
3522764
BAXH7_00621
(pbuG)
View Structure
5
607376-607477
(+)
purine
607606-608095 (+)
purE
BAXH7_00628
Operon
DOOR ID:
1010118
BAXH7_00628
(purE)
,
BAXH7_00629
(purK)
,
BAXH7_00630
(purB)
,
BAXH7_00631
(purC)
,
BAXH7_00632
(purS)
,
BAXH7_00633
(purQ)
,
BAXH7_00634
(purL)
,
BAXH7_00635
(purF)
,
BAXH7_00636
(purM)
,
BAXH7_00637
(purN)
,
BAXH7_00638
(purH)
,
BAXH7_00639
(purD)
View Structure
6
835723-835833
(+)
TPP
835952-837725 (+)
thiC
BAXH7_00845
Single gene
DOOR ID:
3522871
BAXH7_00845
(thiC)
View Structure
7
1045330-1045452
(-)
SAM
1043398-1045240 (-)
yitJ
BAXH7_01074
Single gene
DOOR ID:
3522975
BAXH7_01074
(yitJ)
View Structure
8
1072357-1072504
(+)
FMN
1072635-1073751 (+)
ribD
BAXH7_01113
Operon
DOOR ID:
1010212
BAXH7_01111
(ypuD)
,
BAXH7_01112,
BAXH7_01113
(ribD)
,
BAXH7_01114
(ribE)
,
BAXH7_01115
(ribA)
,
BAXH7_01116
(ribH)
View Structure
9
1092340-1092474
(+)
FMN
1092620-1093193 (+)
ypaA
BAXH7_01135
Operon
DOOR ID:
1010217
BAXH7_01134,
BAXH7_01135
(ypaA)
View Structure
10
1178568-1178667
(+)
purine
1178764-1179349 (+)
xpt
BAXH7_01236
Operon
DOOR ID:
1010237
BAXH7_01236
(xpt)
,
BAXH7_01237
View Structure
11
1429036-1429128
(+)
SAM
1429249-1430251 (+)
yoaD
BAXH7_01562
Operon
DOOR ID:
1010305
BAXH7_01562
(yoaD)
,
BAXH7_01563
(yoaC)
,
BAXH7_01564
(yoaB)
View Structure
12
1853384-1853488
(-)
SAM
1852555-1853257 (-)
cysH
BAXH7_01905
Operon
DOOR ID:
1010377
BAXH7_01902
(cysC)
,
BAXH7_01903
(sat)
,
BAXH7_01904
(cysP)
,
BAXH7_01905
(cysH)
,
BAXH7_01906,
BAXH7_01907
(pyrE)
,
BAXH7_01908
(pyrF)
,
BAXH7_01909
(pyrD)
,
BAXH7_01910
(pyrK)
,
BAXH7_01911,
BAXH7_01912
(pyrAA)
,
BAXH7_01913
(pyrC)
,
BAXH7_01914
(pyrB)
View Structure
13
1876053-1876158
(-)
TPP
1874699-1875980 (-)
ylmB
BAXH7_01929
Operon
DOOR ID:
1010381
BAXH7_01928
(ylmC)
,
BAXH7_01929
(ylmB)
View Structure
14
2027278-2027322
(-)
PreQ1
2026520-2027204 (-)
ykvJ
BAXH7_02098
Operon
DOOR ID:
1010413
BAXH7_02095
(ykvM)
,
BAXH7_02096
(ykvL)
,
BAXH7_02097
(ykvK)
,
BAXH7_02098
(ykvJ)
View Structure
15
2040021-2040120
(-)
SAM
2038724-2039939 (-)
mtnW
BAXH7_02114
Operon
DOOR ID:
1010416
BAXH7_02111
(mtnD)
,
BAXH7_02112
(mtnB)
,
BAXH7_02113
(mtnX)
,
BAXH7_02114
(mtnW)
View Structure
16
2042318-2042472
(+)
SAM
2042581-2043766 (+)
mtnK
BAXH7_02117
Operon
DOOR ID:
1010417
BAXH7_02117
(mtnK)
,
BAXH7_02118
(mtnA)
View Structure
17
2056727-2056827
(-)
yybP-ykoY
2055847-2056630 (-)
ykoY
BAXH7_02131
Single gene
DOOR ID:
3523313
BAXH7_02131
(ykoY)
View Structure
18
2066756-2066921
(-)
ykoK
2065165-2066521 (-)
ykoK
BAXH7_02143
Single gene
DOOR ID:
3523322
BAXH7_02143
(ykoK)
View Structure
19
2068679-2068792
(+)
TPP
2068973-2069573 (+)
ykoE
BAXH7_02147
Operon
DOOR ID:
1010422
BAXH7_02147
(ykoE)
,
BAXH7_02148
(ykoD)
,
BAXH7_02149
(ykoC)
View Structure
20
2074133-2074287
(+)
SAM
2074370-2076659 (+)
metE
BAXH7_02152
Single gene
DOOR ID:
3523328
BAXH7_02152
(metE)
View Structure
21
2089210-2089319
(-)
ykkC-yxkD
2088804-2089143 (-)
ykkC
BAXH7_02167
Operon
DOOR ID:
1010426
BAXH7_02166
(ykkD)
,
BAXH7_02167
(ykkC)
View Structure
22
2251727-2251852
(-)
SAM
2250535-2251657 (-)
yjcI
BAXH7_02376
Operon
DOOR ID:
1010470
BAXH7_02375
(yjcJ)
,
BAXH7_02376
(yjcI)
View Structure
23
2270363-2270471
(-)
TPP
2269565-2270276 (-)
tenA
BAXH7_02404
Operon
DOOR ID:
1010475
BAXH7_02398
(yjbV)
,
BAXH7_02399
(thiF)
,
BAXH7_02400
(thiG)
,
BAXH7_02401
(thiS)
,
BAXH7_02402
(goxB)
,
BAXH7_02403
(tenI)
,
BAXH7_02404
(tenA)
View Structure
24
2419525-2419625
(-)
glycine
2418245-2419346 (-)
gcvT
BAXH7_02576
Operon
DOOR ID:
1010516
BAXH7_02574
(gcvPB)
,
BAXH7_02575
(gcvPA)
,
BAXH7_02576
(gcvT)
View Structure
25
2667116-2667295
(-)
lysine
2665760-2666990 (-)
lysC
BAXH7_02863
Single gene
DOOR ID:
3523539
BAXH7_02863
(lysC)
View Structure
26
2861750-2861888
(-)
SAM
2860377-2861580 (-)
metK
BAXH7_03067
Single gene
DOOR ID:
3523620
BAXH7_03067
(metK)
View Structure
27
2890976-2891076
(+)
TPP
2891174-2891756 (+)
yuaJ
BAXH7_03098
Single gene
DOOR ID:
3523634
BAXH7_03098
(yuaJ)
View Structure
28
3144426-3144532
(-)
SAM
3143294-3144320 (-)
yusC
BAXH7_03382
Operon
DOOR ID:
1010694
BAXH7_03380
(yusA)
,
BAXH7_03381
(yusB)
,
BAXH7_03382
(yusC)
,
BAXH7_03383
View Structure
29
3199516-3199696
(-)
lysine
3197994-3199407 (-)
yvsH
BAXH7_03445
Single gene
DOOR ID:
3523757
BAXH7_03445
(yvsH)
View Structure
30
3740927-3741028
(-)
ykkC-yxkD
3740023-3740860 (-)
yxkD
BAXH7_04031
Single gene
DOOR ID:
3523954
BAXH7_04031
(yxkD)
View Structure
31
3745829-3745915
(+)
SAM
3745921-3747130 (+)
yxjG
BAXH7_04040
Single gene
DOOR ID:
3523959
BAXH7_04040
(yxjG)
View Structure
32
3748409-3748509
(+)
purine
3748644-3749838 (+)
yxjA
BAXH7_04043
Single gene
DOOR ID:
3523962
BAXH7_04043
(yxjA)
View Structure
33
3838463-3838543
(-)
glycine
3836965-3838318 (-)
ydgF
BAXH7_04131
Single gene
DOOR ID:
3523993
BAXH7_04131
(ydgF)
View Structure
Genome:
Bacillus amyloliquefaciens XH7
(
NC_017191.1
);
Phylum:
Firmicutes
a:34:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017191.1";i:2;s:31:"Bacillus amyloliquefaciens XH7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"188696-188867";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"188956-190759";i:10;s:1:"+";i:11;s:4:"glmS";i:12;s:0:"";i:13;s:11:"BAXH7_00188";i:14;s:6:"Operon";i:15;s:7:"1010031";i:16;s:29:"BAXH7_00187;BAXH7_00188(glmS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017191.1";i:2;s:31:"Bacillus amyloliquefaciens XH7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"425016-425162";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"425318-427139";i:10;s:1:"+";i:11;s:4:"ydaO";i:12;s:0:"";i:13;s:11:"BAXH7_00420";i:14;s:11:"Single gene";i:15;s:7:"3522667";i:16;s:17:"BAXH7_00420(ydaO)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017191.1";i:2;s:31:"Bacillus amyloliquefaciens XH7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"540235-540334";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"539018-540179";i:10;s:1:"-";i:11;s:4:"pbuE";i:12;s:0:"";i:13;s:11:"BAXH7_00563";i:14;s:11:"Single gene";i:15;s:7:"3522741";i:16;s:17:"BAXH7_00563(pbuE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017191.1";i:2;s:31:"Bacillus amyloliquefaciens XH7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"603564-603665";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"603795-605118";i:10;s:1:"+";i:11;s:4:"pbuG";i:12;s:0:"";i:13;s:11:"BAXH7_00621";i:14;s:11:"Single gene";i:15;s:7:"3522764";i:16;s:17:"BAXH7_00621(pbuG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017191.1";i:2;s:31:"Bacillus amyloliquefaciens XH7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"607376-607477";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"607606-608095";i:10;s:1:"+";i:11;s:4:"purE";i:12;s:0:"";i:13;s:11:"BAXH7_00628";i:14;s:6:"Operon";i:15;s:7:"1010118";i:16;s:215:"BAXH7_00628(purE);BAXH7_00629(purK);BAXH7_00630(purB);BAXH7_00631(purC);BAXH7_00632(purS);BAXH7_00633(purQ);BAXH7_00634(purL);BAXH7_00635(purF);BAXH7_00636(purM);BAXH7_00637(purN);BAXH7_00638(purH);BAXH7_00639(purD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017191.1";i:2;s:31:"Bacillus amyloliquefaciens XH7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"835723-835833";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"835952-837725";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:0:"";i:13;s:11:"BAXH7_00845";i:14;s:11:"Single gene";i:15;s:7:"3522871";i:16;s:17:"BAXH7_00845(thiC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017191.1";i:2;s:31:"Bacillus amyloliquefaciens XH7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1045330-1045452";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1043398-1045240";i:10;s:1:"-";i:11;s:4:"yitJ";i:12;s:0:"";i:13;s:11:"BAXH7_01074";i:14;s:11:"Single gene";i:15;s:7:"3522975";i:16;s:17:"BAXH7_01074(yitJ)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017191.1";i:2;s:31:"Bacillus amyloliquefaciens XH7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1072357-1072504";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1072635-1073751";i:10;s:1:"+";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:11:"BAXH7_01113";i:14;s:6:"Operon";i:15;s:7:"1010212";i:16;s:101:"BAXH7_01111(ypuD);BAXH7_01112;BAXH7_01113(ribD);BAXH7_01114(ribE);BAXH7_01115(ribA);BAXH7_01116(ribH)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017191.1";i:2;s:31:"Bacillus amyloliquefaciens XH7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1092340-1092474";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1092620-1093193";i:10;s:1:"+";i:11;s:4:"ypaA";i:12;s:0:"";i:13;s:11:"BAXH7_01135";i:14;s:6:"Operon";i:15;s:7:"1010217";i:16;s:29:"BAXH7_01134;BAXH7_01135(ypaA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017191.1";i:2;s:31:"Bacillus amyloliquefaciens XH7 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1178568-1178667";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1178764-1179349";i:10;s:1:"+";i:11;s:3:"xpt";i:12;s:0:"";i:13;s:11:"BAXH7_01236";i:14;s:6:"Operon";i:15;s:7:"1010237";i:16;s:28:"BAXH7_01236(xpt);BAXH7_01237";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017191.1";i:2;s:31:"Bacillus amyloliquefaciens XH7 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