Genome: Clostridium difficile BI1 (NC_017179.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 170900-171079 (+)glmS171132-172965 (+)CDBI1_00670

CDBI1_00670Single gene

DOOR ID: 3513647		CDBI1_00670 View Structure
2 181913-182016 (+)SAM182152-183346 (+)CDBI1_00720

CDBI1_00720Single gene

DOOR ID: 3513652		CDBI1_00720 View Structure
3 204498-204615 (+)FMN204739-205345 (+)CDBI1_00805

CDBI1_00805Single gene

DOOR ID: 3513658		CDBI1_00805 View Structure
4 264047-264148 (+)purine264368-265904 (+)guaA

CDBI1_01065Single gene

DOOR ID: 3513682		CDBI1_01065 (guaA) View Structure
5 320244-320334 (+)c-di-GMP-I320740-321058 (+)CDBI1_01320

CDBI1_01320operon

DOOR ID: 1242603		CDBI1_01465,
CDBI1_01460,
CDBI1_01455,
CDBI1_01450 (flgG),
CDBI1_01445 (flgG),
CDBI1_01440,
CDBI1_01435,
CDBI1_01430,
CDBI1_01425,
CDBI1_01420 (flhF),
CDBI1_01415 (flhA),
CDBI1_01410,
CDBI1_01405,
CDBI1_01400 (fliP),
CDBI1_01395,
CDBI1_01390,
CDBI1_01385,
CDBI1_01380,
CDBI1_01375,
CDBI1_01370,
CDBI1_01365,
CDBI1_01360,
CDBI1_01355,
CDBI1_01350,
CDBI1_01345,
CDBI1_01340,
CDBI1_01335 (fliF),
CDBI1_01330 (fliE),
CDBI1_01325,
CDBI1_01320		 View Structure
6 404640-404832 (+)cobalamin405020-405773 (+)CDBI1_01745

CDBI1_01745Operon

DOOR ID: 1242614		CDBI1_01760,
CDBI1_01755,
CDBI1_01750,
CDBI1_01745		 View Structure
7 529411-529517 (+)ykkC-yxkD529586-529907 (+)CDBI1_02295

CDBI1_02295Single gene

DOOR ID: 3513749		CDBI1_02295 View Structure
8 714348-714424 (+)fluoride714688-715945 (+)CDBI1_03085

CDBI1_03085Operon

DOOR ID: 1242675		CDBI1_03090,
CDBI1_03085		 View Structure
9 1232003-1232109 (+)SAM1232211-1233417 (+)CDBI1_05235

CDBI1_05235Single gene

DOOR ID: 3513993		CDBI1_05235 View Structure
10 1522385-1522481 (-)c-di-GMP-I1522154-1522331 (-)CDBI1_06610

CDBI1_06610single gene

DOOR ID: 3514110		CDBI1_06610 View Structure
11 1594938-1595044 (+)SAM1595149-1596115 (+)CDBI1_06960

CDBI1_06960Operon

DOOR ID: 1242827		CDBI1_06960,
CDBI1_06965,
CDBI1_06970		 View Structure
12 1779217-1779309 (+)TPP1779408-1780203 (+)CDBI1_07870

CDBI1_07870Operon

DOOR ID: 1242859		CDBI1_07870,
CDBI1_07875,
CDBI1_07880		 View Structure
13 1842114-1842219 (-)SAM1841203-1842001 (-)CDBI1_08140

CDBI1_08140Single gene

DOOR ID: 3514230		CDBI1_08140 View Structure
14 1843461-1843637 (+)lysine1843780-1845511 (+)CDBI1_08150

CDBI1_08150Single gene

DOOR ID: 3514232		CDBI1_08150 View Structure
15 1846598-1846702 (+)glycine1846911-1849386 (+)CDBI1_08155

CDBI1_08155Operon

DOOR ID: 1242869		CDBI1_08155,
CDBI1_08160		 View Structure
16 1878847-1878890 (+)PreQ11878990-1879959 (+)CDBI1_08290

CDBI1_08290Operon

DOOR ID: 1242874		CDBI1_08290,
CDBI1_08295,
CDBI1_08300		 View Structure
17 1895670-1895791 (-)FMN1894434-1895538 (-)CDBI1_08380

CDBI1_08380Operon

DOOR ID: 1242879		CDBI1_08370,
CDBI1_08375,
CDBI1_08380		 View Structure
18 1898551-1898662 (+)TPP1898803-1900105 (+)CDBI1_08390

CDBI1_08390Single gene

DOOR ID: 3514249		CDBI1_08390 View Structure
19 2026057-2026159 (+)SAM2026268-2027534 (+)CDBI1_09020

CDBI1_09020Operon

DOOR ID: 1242906		CDBI1_09020,
CDBI1_09025		 View Structure
20 2151247-2151346 (-)TPP2150825-2151116 (-)CDBI1_09600

CDBI1_09600Operon

DOOR ID: 1242929		CDBI1_09585,
CDBI1_09590,
CDBI1_09595,
CDBI1_09600		 View Structure
21 2151966-2152055 (+)c-di-GMP-I2152107-2152284 (+)CDBI1_09605

CDBI1_09605single gene

DOOR ID: 3514348		CDBI1_09605 View Structure
22 2164363-2164456 (-)c-di-GMP-I2163794-2164280 (-)CDBI1_09660

CDBI1_09660single gene

DOOR ID: 3514357		CDBI1_09660 View Structure
23 2165422-2165519 (+)c-di-GMP-I2165573-2165750 (+)CDBI1_09670

CDBI1_09670single gene

DOOR ID: 3514359		CDBI1_09670 View Structure
24 2217221-2217389 (-)lysine2215945-2217139 (-)CDBI1_09925

CDBI1_09925Operon

DOOR ID: 1242936		CDBI1_09920,
CDBI1_09925		 View Structure
25 2284347-2284449 (-)purine2282876-2284253 (-)CDBI1_10190

CDBI1_10190Single gene

DOOR ID: 3514417		CDBI1_10190 View Structure
26 2484399-2484487 (+)glycine2484676-2486044 (+)CDBI1_11020

CDBI1_11020Single gene

DOOR ID: 3514505		CDBI1_11020 View Structure
27 2510128-2510217 (+)c-di-GMP-I2510270-2510447 (+)CDBI1_11150

CDBI1_11150single gene

DOOR ID: 3514517		CDBI1_11150 View Structure
28 2533018-2533119 (-)purine2532262-2532835 (-)CDBI1_11255

CDBI1_11255Operon

DOOR ID: 1242987		CDBI1_11250,
CDBI1_11255		 View Structure
29 2563982-2564092 (-)glycine2563506-2563878 (-)CDBI1_11390

CDBI1_11390Single gene

DOOR ID: 3514535		CDBI1_11390 View Structure
30 2604288-2604382 (-)ykkC-yxkD2603519-2604224 (-)CDBI1_11590

CDBI1_11590Single gene

DOOR ID: 3514549		CDBI1_11590 View Structure
31 2966880-2966981 (+)purine2967053-2968397 (+)CDBI1_13165

CDBI1_13165Single gene

DOOR ID: 3514653		CDBI1_13165 View Structure
32 3104051-3104136 (-)c-di-GMP-I3097963-3103927 (-)CDBI1_13635

CDBI1_13635single gene

DOOR ID: 3514694		CDBI1_13635 View Structure
33 3144525-3144610 (-)c-di-GMP-I3143762-3144425 (-)CDBI1_13835

CDBI1_13835single gene

DOOR ID: 3514720		CDBI1_13835 View Structure
34 3147863-3147948 (-)c-di-GMP-II3144795-3147750 (-)CDBI1_13840

CDBI1_13840Single gene

DOOR ID: 3514721		CDBI1_13840 View Structure
35 3284201-3284382 (-)cobalamin3282842-3283973 (-)CDBI1_14420

CDBI1_14420Single gene

DOOR ID: 3514761		CDBI1_14420 View Structure
36 3415442-3415621 (-)lysine3413906-3415298 (-)CDBI1_14945

CDBI1_14945Operon

DOOR ID: 1243134		CDBI1_14940,
CDBI1_14945		 View Structure
37 3609543-3609717 (+)lysine3609889-3610891 (+)CDBI1_15790

CDBI1_15790Operon

DOOR ID: 1243179		CDBI1_15790,
CDBI1_15795,
CDBI1_15800		 View Structure
38 3663793-3663876 (-)c-di-GMP-II3662535-3663213 (-)CDBI1_16015

CDBI1_16015Operon

DOOR ID: 1243185		CDBI1_16005,
CDBI1_16010,
CDBI1_16015		 View Structure
39 3698808-3698923 (+)FMN3699097-3700468 (+)CDBI1_16180

CDBI1_16180Single gene

DOOR ID: 3514900		CDBI1_16180 View Structure
40 3758256-3758352 (+)c-di-GMP-I3758405-3758582 (+)CDBI1_16465

CDBI1_16465single gene

DOOR ID: 3514928		CDBI1_16465 View Structure
41 3820014-3820193 (-)cobalamin3818384-3819899 (-)CDBI1_16685

CDBI1_16685Operon

DOOR ID: 1243210		CDBI1_16605,
CDBI1_16610,
CDBI1_16615 (hemC),
CDBI1_16620,
CDBI1_16625,
CDBI1_16630,
CDBI1_16635,
CDBI1_16640 (cbiF),
CDBI1_16645,
CDBI1_16650,
CDBI1_16655 (cbiD),
CDBI1_16660 (cbiC),
CDBI1_16665,
CDBI1_16670,
CDBI1_16675,
CDBI1_16680,
CDBI1_16685		 View Structure
42 3913832-3913917 (-)c-di-GMP-II3913148-3913670 (-)CDBI1_17190

CDBI1_17190Single gene

DOOR ID: 3514967		CDBI1_17190 View Structure