Genome: Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 (NC_017167.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 141355-141441 (+)c-di-GMP-I141605-141806 (-)TC41_0140

Uncharacterized protein		TC41_0140single gene

DOOR ID: 3508772		TC41_0140 View Structure
2 296454-296516 (+)fluoride296999-297371 (+)crcB

Putative fluoride ion transporter CrcB		TC41_0317Operon

DOOR ID: 1006700		TC41_0316,
TC41_0317 (crcB)		 View Structure
3 450167-450249 (-)c-di-GMP-II449832-450018 (+)TC41_0445

TC41_0445Single gene

DOOR ID: 3508887		TC41_0445 View Structure
4 521615-521716 (+)purine521880-523410 (+)guaA

GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)		TC41_0519Operon

DOOR ID: 1006743		TC41_0519 (guaA),
TC41_0520 (purB),
TC41_0521 (purC),
TC41_0522 (purL),
TC41_0523 (purL),
TC41_0524 (purL),
TC41_0525 (purF),
TC41_0526 (purM),
TC41_0527 (purH),
TC41_0528 (purD)		 View Structure
5 708908-709038 (+)ydaO-yuaA709196-710591 (+)yaaU

General substrate transporter		TC41_0702Single gene

DOOR ID: 3508957		TC41_0702 (yaaU) View Structure
6 753291-753393 (+)ykkC-yxkD753478-754906 (+)TC41_0741

Amino acid permease-associated region		TC41_0741Operon

DOOR ID: 1006789		TC41_0741,
TC41_0742,
TC41_0743,
TC41_0744,
TC41_0745,
TC41_0746		 View Structure
7 967082-967228 (+)FMN967335-968451 (+)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		TC41_0946Operon

DOOR ID: 1006829		TC41_0946 (ribD),
TC41_0947 (ribE)		 View Structure
8 971557-971658 (+)TPP971751-972321 (+)TC41_0951

ABC-type thiamin-related transport system; permease component 1; predicted		TC41_0951Operon

DOOR ID: 1006831		TC41_0951,
TC41_0952 (cbiO)		 View Structure
9 1083019-1083163 (-)ydaO-yuaA1082476-1083019 (-)TC41_1087

NLP/P60 protein		TC41_1087Single gene

DOOR ID: 3509084		TC41_1087 View Structure
10 1134992-1135073 (+)ZMP-ZTP1135136-1136726 (+)serA

D-3-phosphoglycerate dehydrogenase (5)		TC41_1144Operon

DOOR ID: 1006872		TC41_1144 (serA),
TC41_1145 (serC),
TC41_1146		 View Structure
11 1286356-1286488 (+)ydaO-yuaA1286545-1286680 (+)TC41_1295

TC41_1295Operon

DOOR ID: 1006901		TC41_1295,
TC41_1296,
TC41_1297 (rplS)		 View Structure
12 1297837-1297978 (+)ydaO-yuaA1298854-1299631 (-)TC41_1312

Metal-dependent protein hydrolase		TC41_1312Single gene

DOOR ID: 3509148		TC41_1312 View Structure
13 1466132-1466339 (+)cobalamin1466484-1468845 (+)nrdA

Ribonucleoside-diphosphate reductase 		TC41_1493Operon

DOOR ID: 1006941		TC41_1493 (nrdA),
TC41_1494 (nrdB)		 View Structure
14 1936319-1936417 (+)TPP1936461-1937160 (+)tenA

Aminopyrimidine aminohydrolase 		TC41_2031Operon

DOOR ID: 1007051		TC41_2031 (tenA),
TC41_2032 (thiD),
TC41_2033 (thiM),
TC41_2034 (thiE)		 View Structure
15 1957142-1957345 (-)cobalamin1956062-1957010 (-)TC41_2050

Periplasmic binding protein		TC41_2050Operon

DOOR ID: 1007055		TC41_2049,
TC41_2050,
TC41_2051		 View Structure
16 2176467-2176604 (-)FMN2175280-2176264 (-)TC41_2274

TC41_2274Single gene

DOOR ID: 3509421		TC41_2274 View Structure
17 2212401-2212564 (-)ykoK2212149-2212347 (+)TC41_2316

TC41_2316Single gene

DOOR ID: 3509437		TC41_2316 View Structure
18 2814546-2814657 (-)TPP2812637-2814317 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		TC41_2960Operon

DOOR ID: 1007250		TC41_2959,
TC41_2960 (thiC)		 View Structure
19 2816401-2816503 (-)purine2814765-2816238 (-)TC41_2961

Permease for cytosine/purines uracil thiamine allantoin		TC41_2961Single gene

DOOR ID: 3509673		TC41_2961 View Structure
20 2848657-2848812 (-)glmS2844897-2846250 (-)TC41_2996

Transposase IS4 family protein		TC41_2996Single gene

DOOR ID: 3509682		TC41_2996 View Structure
21 3000287-3000367 (+)ZMP-ZTP3000457-3001315 (+)folD

Bifunctional protein FolD [Includes: Methenyltetrahydrofolate cyclohydrolase ]		TC41_3190Single gene

DOOR ID: 3509725		TC41_3190 (folD) View Structure