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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
364741-364787
(+)
mini-ykkC
364806-365121 (+)
sugE
YPD8_0310
Single gene
DOOR ID:
3505700
YPD8_0310
(sugE)
View Structure
2
564879-565016
(-)
TPP
563811-564858 (-)
YPD8_0460
YPD8_0460
Operon
DOOR ID:
1005187
YPD8_0458,
YPD8_0459
(cysU)
,
YPD8_0460
View Structure
3
713555-713744
(+)
FMN
713985-714639 (+)
ribB
YPD8_0570
Single gene
DOOR ID:
3505812
YPD8_0570
(ribB)
View Structure
4
1453554-1453700
(-)
MOCO
1452006-1452486 (-)
moaC
YPD8_1117
Operon
DOOR ID:
1005308
YPD8_1117
(moaC)
,
YPD8_1118
(moaA)
View Structure
5
2538990-2539189
(+)
yybP-ykoY
2539199-2539769 (+)
YPD8_2002
YPD8_2002
Single gene
DOOR ID:
3506487
YPD8_2002
View Structure
6
2899414-2899477
(-)
fluoride
2898929-2899313 (-)
ccrB
YPD8_2270
Single gene
DOOR ID:
3506627
YPD8_2270
(ccrB)
View Structure
7
3109003-3109107
(+)
TPP
3109230-3110031 (+)
thiD
YPD8_2443
Single gene
DOOR ID:
3506700
YPD8_2443
(thiD)
View Structure
8
4163224-4163349
(+)
TPP
4163482-4165528 (+)
thiC
YPD8_3291
Operon
DOOR ID:
1005728
YPD8_3291
(thiC)
,
YPD8_3292,
YPD8_3293
(thiF)
View Structure
9
4365951-4366213
(-)
cobalamin
4363986-4365882 (-)
YPD8_3446
YPD8_3446
Single gene
DOOR ID:
3507156
YPD8_3446
View Structure
Genome:
Yersinia pestis D182038
(
NC_017160.1
);
Phylum:
Gammaproteobacteria
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