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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
362734-362780
(+)
mini-ykkC
363278-363635 (-)
frdD
YPD4_0309
Operon
DOOR ID:
1004346
YPD4_0309
(frdD)
,
YPD4_0310
(frdC)
,
YPD4_0311
(frdB)
,
YPD4_0312
(frdA)
View Structure
2
562706-562843
(-)
TPP
561638-562685 (-)
YPD4_0460
YPD4_0460
Operon
DOOR ID:
1004375
YPD4_0458,
YPD4_0459,
YPD4_0460
View Structure
3
711376-711565
(+)
FMN
711806-712460 (+)
ribB
YPD4_0569
Single gene
DOOR ID:
3504230
YPD4_0569
(ribB)
View Structure
4
1298008-1298154
(+)
MOCO
1299221-1299701 (+)
moaC
YPD4_1010
Operon
DOOR ID:
1004493
YPD4_1009
(moaA)
,
YPD4_1010
(moaC)
View Structure
5
1999284-1999483
(-)
yybP-ykoY
1998703-1999273 (-)
YPD4_1552
YPD4_1552
Single gene
DOOR ID:
3504599
YPD4_1552
View Structure
6
2882291-2882395
(-)
TPP
2881366-2882167 (-)
thiD
YPD4_2244
Single gene
DOOR ID:
3504847
YPD4_2244
(thiD)
View Structure
7
3091775-3091838
(+)
fluoride
3091938-3092322 (+)
YPD4_2423
YPD4_2423
Single gene
DOOR ID:
3504902
YPD4_2423
View Structure
8
4177196-4177321
(+)
TPP
4177454-4179500 (+)
thiC
YPD4_3291
Operon
DOOR ID:
1004984
YPD4_3291
(thiC)
,
YPD4_3292,
YPD4_3293
(thiF)
View Structure
9
4379816-4380078
(-)
cobalamin
4377851-4379747 (-)
YPD4_3444
YPD4_3444
Operon
DOOR ID:
1005018
YPD4_3443
(murI)
,
YPD4_3444
View Structure
Genome:
Yersinia pestis D106004
(
NC_017154.1
);
Phylum:
Gammaproteobacteria
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