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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
440665-440897
(+)
cobalamin
441031-443191 (+)
APA42C_04230
APA42C_04230
Operon
DOOR ID:
1003804
APA42C_04230,
APA42C_04240,
APA42C_04250
(fecCD)
,
APA42C_04260
View Structure
2
1402372-1402491
(+)
TPP
1402522-1403353 (+)
APA42C_13250
APA42C_13250
Single gene
DOOR ID:
3503541
APA42C_13250
View Structure
3
1494529-1494711
(-)
yybP-ykoY
1493933-1494524 (-)
APA42C_14770
APA42C_14770
Single gene
DOOR ID:
3503570
APA42C_14770
View Structure
4
1901353-1901432
(+)
sam-alpha
1901542-1902751 (+)
APA42C_18390
APA42C_18390
Operon
DOOR ID:
1004074
APA42C_18390,
APA42C_18400
(apaG)
,
APA42C_18410
View Structure
5
1924268-1924414
(-)
FMN
1923115-1924168 (-)
ribD
APA42C_18580
Operon
DOOR ID:
1004078
APA42C_18530,
APA42C_18540,
APA42C_18550,
APA42C_18560,
APA42C_18570,
APA42C_18580
(ribD)
View Structure
6
2338819-2339057
(+)
cobalamin
2339098-2339563 (+)
APA42C_22360
APA42C_22360
Operon
DOOR ID:
1004160
APA42C_22360,
APA42C_22370,
APA42C_22380,
APA42C_22390
View Structure
7
2360920-2361157
(-)
cobalamin
2360312-2360741 (-)
APA42C_22540
APA42C_22540
Operon
DOOR ID:
1004163
APA42C_22480
(cobQ)
,
APA42C_22490
(cobOP)
,
APA42C_22500,
APA42C_22510
(cbiA)
,
APA42C_22520
(cobN)
,
APA42C_22530
(cobW)
,
APA42C_22540
View Structure
8
2532012-2532097
(-)
glycine
2530715-2531852 (-)
APA42C_24240
APA42C_24240
Operon
DOOR ID:
1004200
APA42C_24220,
APA42C_24230,
APA42C_24240
View Structure
9
2641965-2642118
(+)
TPP
2642201-2644079 (+)
thiC
APA42C_25230
Single gene
DOOR ID:
3503821
APA42C_25230
(thiC)
View Structure
10
2651287-2651508
(-)
cobalamin
2649575-2651168 (-)
oprB
APA42C_25310
Operon
DOOR ID:
1004227
APA42C_25290,
APA42C_25300,
APA42C_25310
(oprB)
View Structure
Genome:
Acetobacter pasteurianus IFO 3283-01-42C
(
NC_017150.1
);
Phylum:
Alphaproteobacteria
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