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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
440659-440891
(+)
cobalamin
441025-443185 (+)
APA26_04230
APA26_04230
Operon
DOOR ID:
1341328
APA26_04260,
APA26_04250
(fecCD)
,
APA26_04240,
APA26_04230
View Structure
2
1403383-1403502
(+)
TPP
1403533-1404364 (+)
APA26_13250
APA26_13250
Single gene
DOOR ID:
3502437
APA26_13250
View Structure
3
1587794-1587976
(-)
yybP-ykoY
1587198-1587789 (-)
APA26_14770
APA26_14770
Single gene
DOOR ID:
3502498
APA26_14770
View Structure
4
1996269-1996348
(+)
sam-alpha
1996458-1997667 (+)
APA26_18390
APA26_18390
Single gene
DOOR ID:
3502652
APA26_18390
View Structure
5
2019184-2019330
(-)
FMN
2018031-2019084 (-)
ribD
APA26_18580
Operon
DOOR ID:
1341616
APA26_18530,
APA26_18540,
APA26_18550,
APA26_18560,
APA26_18570,
APA26_18580
(ribD)
View Structure
6
2432302-2432540
(+)
cobalamin
2432581-2433046 (+)
APA26_22360
APA26_22360
Single gene
DOOR ID:
3502786
APA26_22360
View Structure
7
2454403-2454640
(-)
cobalamin
2453795-2454224 (-)
APA26_22540
APA26_22540
Operon
DOOR ID:
1341694
APA26_22510
(cbiA)
,
APA26_22520
(cobN)
,
APA26_22530
(cobW)
,
APA26_22540
View Structure
8
2625495-2625580
(-)
glycine
2624198-2625335 (-)
APA26_24240
APA26_24240
Operon
DOOR ID:
1341727
APA26_24220,
APA26_24230,
APA26_24240
View Structure
9
2734033-2734186
(+)
TPP
2734269-2736147 (+)
thiC
APA26_25230
Single gene
DOOR ID:
3502886
APA26_25230
(thiC)
View Structure
10
2743355-2743576
(-)
cobalamin
2741643-2743236 (-)
oprB
APA26_25310
Single gene
DOOR ID:
3502889
APA26_25310
(oprB)
View Structure
Genome:
Acetobacter pasteurianus IFO 3283-26
(
NC_017146.1
);
Phylum:
Alphaproteobacteria
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