Genome: Bacillus megaterium WSH-002 (NC_017138.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 288657-288764 (+)SAM288895-289921 (+)BMWSH_0275

Methionine import ATP-binding protein MetN
BMWSH_0275Operon

DOOR ID: 1002350
BMWSH_0275,
BMWSH_0276,
BMWSH_0277
View Structure
2 347015-347117 (+)SAM347371-348085 (+)cysH

Phosphoadenosine phosphosulfate reductase (3'-phosphoadenylylsulfate reductase) (PAPS reductase; thioredoxin dependent) (PAPS sulfotransferase) (PAdoPS reductase)
BMWSH_0341Operon

DOOR ID: 1002358
BMWSH_0341 (cysH),
BMWSH_0342 (cysP),
BMWSH_0343 (sat),
BMWSH_0344,
BMWSH_0345
View Structure
3 381239-381425 (+)cobalamin381557-383801 (+)nrdE

Ribonucleoside-diphosphate reductase
BMWSH_0360Operon

DOOR ID: 1002361
BMWSH_0360 (nrdE),
BMWSH_0361 (nrdF)
View Structure
4 401663-401780 (+)SAM401912-403115 (+)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
BMWSH_0385Single gene

DOOR ID: 3500205
BMWSH_0385 (metK) View Structure
5 542580-542757 (+)lysine542898-544131 (+)lysC

Aspartokinase
BMWSH_0524Single gene

DOOR ID: 3500274
BMWSH_0524 (lysC) View Structure
6 768706-768798 (+)glycine769010-770111 (+)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)
BMWSH_0752Single gene

DOOR ID: 3500354
BMWSH_0752 (gcvT) View Structure
7 885659-885801 (+)FMN885955-886531 (+)BMWSH_0868

Riboflavin transporter
BMWSH_0868Single gene

DOOR ID: 3500391
BMWSH_0868 View Structure
8 1158742-1158884 (+)ydaO-yuaA1159046-1160873 (+)BMWSH_1132

Uncharacterized amino acid permease ydaO
BMWSH_1132Single gene

DOOR ID: 3500454
BMWSH_1132 View Structure
9 1214799-1214953 (+)ydaO-yuaA1215133-1216369 (+)BMWSH_1180

Sodium:dicarboxylate symporter
BMWSH_1180Operon

DOOR ID: 1002532
BMWSH_1180,
BMWSH_1181,
BMWSH_1182
View Structure
10 1284075-1284176 (+)SAM1284245-1284584 (+)BMWSH_1259

BMWSH_1259Single gene

DOOR ID: 3500513
BMWSH_1259 View Structure
11 1346278-1346422 (+)ydaO-yuaA1346546-1347206 (+)BMWSH_1320

K+ transport systems NAD-binding component-like protein
BMWSH_1320Operon

DOOR ID: 1002565
BMWSH_1320 View Structure
12 1405087-1405190 (+)purine1405345-1406224 (+)mtn

Purine or other phosphorylase family 1
BMWSH_1382Single gene

DOOR ID: 3500563
BMWSH_1382 (mtn) View Structure
13 1448606-1448712 (+)SAM1448786-1449797 (+)BMWSH_1430

ABC transporter substrate binding protein
BMWSH_1430Operon

DOOR ID: 1002590
BMWSH_1430,
BMWSH_1431,
BMWSH_1432,
BMWSH_1433,
BMWSH_1434 (yuiH)
View Structure
14 1624623-1624733 (+)SAM1624931-1625000 (+)BMWSH_1643

BMWSH_1643Operon

DOOR ID: 1002641
BMWSH_1643,
BMWSH_1644 (metE),
BMWSH_1645,
BMWSH_1646
View Structure
15 1624813-1625002 (+)cobalamin1625142-1627446 (+)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
BMWSH_1644Operon

DOOR ID: 1002641
BMWSH_1643,
BMWSH_1644 (metE),
BMWSH_1645,
BMWSH_1646
View Structure
16 2015376-2015518 (+)ydaO-yuaA2015590-2015728 (+)BMWSH_2150

BMWSH_2150Single gene

DOOR ID: 3500810
BMWSH_2150 View Structure
17 2015744-2015884 (+)ydaO-yuaA2016002-2016179 (+)BMWSH_2151

BMWSH_2151Operon

DOOR ID: 1002759
BMWSH_2151,
BMWSH_2152 (kdpA),
BMWSH_2153 (kdpB),
BMWSH_2154 (kdpC),
BMWSH_2155 (kdpD),
BMWSH_2156
View Structure
18 2106495-2106675 (+)cobalamin2106765-2108292 (+)cbiP

Cobyric acid synthase
BMWSH_2242Single gene

DOOR ID: 3500847
BMWSH_2242 (cbiP) View Structure
19 2441216-2441395 (+)cobalamin2441479-2441617 (-)BMWSH_2598

BMWSH_2598Single gene

DOOR ID: 3500942
BMWSH_2598 View Structure
20 2441513-2441693 (+)cobalamin2441786-2442173 (+)BMWSH_2599

Putative 2Fe-2S ferredoxin
BMWSH_2599Single gene

DOOR ID: 3500943
BMWSH_2599 View Structure
21 2509459-2509643 (-)lysine2507916-2509356 (-)BMWSH_2668

Putative lysine-specific permease transmembrane protein
BMWSH_2668Single gene

DOOR ID: 3500962
BMWSH_2668 View Structure
22 2509818-2509918 (+)TPP2509950-2510559 (+)BMWSH_2669

Thiamine transporter
BMWSH_2669Operon

DOOR ID: 1002873
BMWSH_2669,
BMWSH_2670 (eutA)
View Structure
23 2642385-2642463 (-)ZMP-ZTP2641017-2642217 (-)BMWSH_2815

D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
BMWSH_2815Operon

DOOR ID: 1002908
BMWSH_2814,
BMWSH_2815
View Structure
24 2711015-2711197 (+)lysine2711342-2712671 (+)lysA

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
BMWSH_2887Operon

DOOR ID: 1002921
BMWSH_2887 (lysA),
BMWSH_2888,
BMWSH_2889,
BMWSH_2890,
BMWSH_2891
View Structure
25 2834710-2834816 (-)SAM2833314-2834625 (-)BMWSH_3017

Na+/H+ antiporter
BMWSH_3017Single gene

DOOR ID: 3501060
BMWSH_3017 View Structure
26 2897639-2897747 (-)TPP2896757-2897564 (-)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
BMWSH_3088Operon

DOOR ID: 1002969
BMWSH_3087 (thiE),
BMWSH_3088 (thiM)
View Structure
27 2912752-2912850 (+)TPP2912945-2913635 (+)BMWSH_3107

Aminopyrimidine aminohydrolase
BMWSH_3107Single gene

DOOR ID: 3501082
BMWSH_3107 View Structure
28 3075338-3075471 (-)cobalamin3074120-3075080 (-)yvrC

DNA binding domain; excisionase family
BMWSH_3287Operon

DOOR ID: 1003018
BMWSH_3278,
BMWSH_3279,
BMWSH_3280,
BMWSH_3281,
BMWSH_3282 (cobS),
BMWSH_3283 (cobU),
BMWSH_3284 (cobC),
BMWSH_3285 (cobD),
BMWSH_3286,
BMWSH_3287 (yvrC)
View Structure
29 3391560-3391676 (-)SAM3390660-3391479 (-)BMWSH_3630

Lipoprotein
BMWSH_3630Operon

DOOR ID: 1003098
BMWSH_3628,
BMWSH_3629,
BMWSH_3630
View Structure
30 3540713-3540814 (-)purine3540354-3540624 (-)xpt

Xanthine phosphoribosyltransferase 1
BMWSH_3780Operon

DOOR ID: 1003133
BMWSH_3777,
BMWSH_3778 (pbuX),
BMWSH_3779,
BMWSH_3780 (xpt)
View Structure
31 3572595-3572712 (-)SAM3571378-3572524 (-)BMWSH_3814

Cystathionine gamma-synthase; putative
BMWSH_3814Operon

DOOR ID: 1003142
BMWSH_3813 (metC),
BMWSH_3814
View Structure
32 3685661-3685811 (-)FMN3684722-3685382 (-)ribE

Riboflavin synthase alpha chain-like protein
BMWSH_3936Operon

DOOR ID: 1003170
BMWSH_3933,
BMWSH_3934 (ribH),
BMWSH_3935 (ribBA),
BMWSH_3936 (ribE)
View Structure
33 3687286-3687392 (+)SAM3687499-3689338 (+)yitJ

Bifunctional homocysteine S-methyltransferase/5;10-methylenetetrahydrofolate reductase protein
BMWSH_3939Operon

DOOR ID: 1003171
BMWSH_3939 (yitJ),
BMWSH_3940 (metH)
View Structure
34 3705174-3705217 (-)PreQ13705024-3705168 (-)BMWSH_3963

BMWSH_3963Operon

DOOR ID: 1003178
BMWSH_3958,
BMWSH_3959 (ykvM),
BMWSH_3960,
BMWSH_3961,
BMWSH_3962,
BMWSH_3963,
BMWSH_3964 (gerKB),
BMWSH_3965,
BMWSH_3966 (gerKC),
BMWSH_3967 (gerKA)
View Structure
35 3731460-3731566 (-)SAM3730135-3731380 (-)mtnW

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)
BMWSH_3986Operon

DOOR ID: 1003184
BMWSH_3985 (mtnX),
BMWSH_3986 (mtnW)
View Structure
36 3733854-3734004 (+)SAM3734139-3735312 (+)mtnK

Methylthioribose kinase (MTR kinase) (00)
BMWSH_3989Operon

DOOR ID: 1003185
BMWSH_3989 (mtnK),
BMWSH_3990 (mtnA)
View Structure
37 3757615-3757709 (-)yybP-ykoY3756701-3757517 (-)ykoY

Uncharacterized membrane protein ykoY
BMWSH_4015Single gene

DOOR ID: 3501348
BMWSH_4015 (ykoY) View Structure
38 3782961-3783062 (-)SAM3782652-3782895 (-)BMWSH_4039

BMWSH_4039Operon

DOOR ID: 1003199
BMWSH_4037,
BMWSH_4038,
BMWSH_4039
View Structure
39 3829336-3829420 (+)c-di-GMP-I3829438-3829570 (+)BMWSH_4090

Uncharacterized protein
BMWSH_4090single gene

DOOR ID: 3501369
BMWSH_4090 View Structure
40 3878564-3878656 (+)c-di-GMP-I3878844-3879636 (-)BMWSH_4132

Histidinol-phosphatase; putative
BMWSH_4132single gene

DOOR ID: 3501385
BMWSH_4132 View Structure
41 3889773-3889857 (+)c-di-GMP-I3889880-3891383 (+)BMWSH_4144

Uncharacterized protein
BMWSH_4144single gene

DOOR ID: 3501388
BMWSH_4144 View Structure
42 4000950-4001066 (-)ykkC-yxkD3999218-4000544 (-)BMWSH_4259

Amidohydrolase 3
BMWSH_4259Single gene

DOOR ID: 3501418
BMWSH_4259 View Structure
43 4001052-4001153 (-)purine3999218-4000544 (-)BMWSH_4259

Amidohydrolase 3
BMWSH_4259Single gene

DOOR ID: 3501418
BMWSH_4259 View Structure
44 4001364-4001465 (+)ykkC-yxkD4001528-4002878 (+)BMWSH_4260

Amino acid permease family protein
BMWSH_4260Single gene

DOOR ID: 3501419
BMWSH_4260 View Structure
45 4003003-4003107 (+)ykkC-yxkD4003154-4003892 (+)BMWSH_4261

Urea carboxylase-associated protein 2
BMWSH_4261Operon

DOOR ID: 1003248
BMWSH_4261,
BMWSH_4262,
BMWSH_4263,
BMWSH_4264
View Structure
46 4046030-4046129 (-)SAM4045234-4045786 (+)BMWSH_4297

BMWSH_4297Operon

DOOR ID: 1003255
BMWSH_4296 (ykoF),
BMWSH_4297
View Structure
47 4106997-4107099 (-)TPP4105604-4106882 (-)ylmB

Acetylornitine deacetylase; putative
BMWSH_4358Operon

DOOR ID: 1003267
BMWSH_4352 (fer),
BMWSH_4353,
BMWSH_4354,
BMWSH_4355,
BMWSH_4356,
BMWSH_4357 (tenA),
BMWSH_4358 (ylmB)
View Structure
48 4171226-4171327 (-)purine4169893-4171087 (-)yxjA

Nucleoside permease
BMWSH_4420Single gene

DOOR ID: 3501456
BMWSH_4420 (yxjA) View Structure
49 4191130-4191208 (-)ZMP-ZTP4189478-4191074 (-)ybeC

Putative amino-acid permease transmembrane protein
BMWSH_4440Operon

DOOR ID: 1003289
BMWSH_4439 (ycdA),
BMWSH_4440 (ybeC)
View Structure
50 4457911-4458012 (-)TPP4457164-4457866 (-)tenI

Thiamine-phosphate pyrophosphorylase; putative
BMWSH_4685Operon

DOOR ID: 1003346
BMWSH_4680 (thiD1),
BMWSH_4681,
BMWSH_4682 (thiG),
BMWSH_4683 (thiS),
BMWSH_4684 (goxB),
BMWSH_4685 (tenI)
View Structure
51 4498579-4498769 (-)cobalamin4496891-4498433 (-)appAA

Oligopeptide ABC transporter (Oligopeptide-binding protein)
BMWSH_4727Operon

DOOR ID: 1003358
BMWSH_4726,
BMWSH_4727 (appAA)
View Structure
52 4505309-4505353 (-)PreQ14504810-4505299 (-)BMWSH_4739

Hypothetical Membrane Spanning Protein
BMWSH_4739Operon

DOOR ID: 1003361
BMWSH_4739,
BMWSH_4740
View Structure
53 4558574-4558713 (-)ydaO-yuaA4557207-4558467 (-)gltT

Proton/sodium-glutamate symport protein
BMWSH_4793Single gene

DOOR ID: 3501558
BMWSH_4793 (gltT) View Structure
54 4560641-4560755 (+)TPP4560869-4562639 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BMWSH_4796Operon

DOOR ID: 1003373
BMWSH_4796 (thiC),
BMWSH_4797
View Structure
55 4605998-4606078 (-)glycine4604496-4605840 (-)ydgF

Aromatic amino acid transport protein AroP (General aromatic aminoacid permease)
BMWSH_4837Single gene

DOOR ID: 3501578
BMWSH_4837 (ydgF) View Structure
56 4623896-4623997 (+)purine4624080-4625817 (+)adeC

Adenine deaminase (Adenase) (Adenine aminase)
BMWSH_4860Single gene

DOOR ID: 3501586
BMWSH_4860 (adeC) View Structure
57 4672955-4673138 (-)cobalamin4672024-4672822 (-)BMWSH_4903

Nickel/cobalt efflux system
BMWSH_4903Single gene

DOOR ID: 3501601
BMWSH_4903 View Structure
58 4734529-4734630 (-)purine4733911-4734400 (-)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)
BMWSH_4958Operon

DOOR ID: 1003406
BMWSH_4949 (purN),
BMWSH_4950 (purM),
BMWSH_4951 (purF),
BMWSH_4952 (purL),
BMWSH_4953 (purQ),
BMWSH_4954 (purS),
BMWSH_4955 (purC),
BMWSH_4956 (purB),
BMWSH_4957 (purK),
BMWSH_4958 (purE)
View Structure
59 4762476-4762577 (-)purine4761016-4762261 (-)pbuG

Guanine/hypoxanthine permease pbuG
BMWSH_4976Single gene

DOOR ID: 3501617
BMWSH_4976 (pbuG) View Structure
60 4764327-4764428 (-)purine4762674-4764213 (-)guaA

GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)
BMWSH_4977Single gene

DOOR ID: 3501618
BMWSH_4977 (guaA) View Structure
61 4828091-4828263 (-)glmS4826237-4828040 (-)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
BMWSH_5036Operon

DOOR ID: 1003422
BMWSH_5028,
BMWSH_5029 (mtlD),
BMWSH_5030 (mtlR),
BMWSH_5031 (mtlA),
BMWSH_5032,
BMWSH_5033,
BMWSH_5034 (yeeI),
BMWSH_5035,
BMWSH_5036 (glmS)
View Structure