About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
440659-440891
(+)
cobalamin
441025-443185 (+)
APA22_04230
APA22_04230
Operon
DOOR ID:
1340785
APA22_04260,
APA22_04250
(fecCD)
,
APA22_04240,
APA22_04230
View Structure
2
1403383-1403502
(+)
TPP
1403533-1404364 (+)
APA22_13250
APA22_13250
Single gene
DOOR ID:
3499035
APA22_13250
View Structure
3
1587794-1587976
(-)
yybP-ykoY
1587198-1587789 (-)
APA22_14770
APA22_14770
Single gene
DOOR ID:
3499096
APA22_14770
View Structure
4
1996257-1996336
(+)
sam-alpha
1996446-1997655 (+)
APA22_18390
APA22_18390
Single gene
DOOR ID:
3499250
APA22_18390
View Structure
5
2019172-2019318
(-)
FMN
2018019-2019072 (-)
ribD
APA22_18580
Operon
DOOR ID:
1341073
APA22_18530,
APA22_18540,
APA22_18550,
APA22_18560,
APA22_18570,
APA22_18580
(ribD)
View Structure
6
2432260-2432498
(+)
cobalamin
2432539-2433004 (+)
APA22_22360
APA22_22360
Single gene
DOOR ID:
3499384
APA22_22360
View Structure
7
2454361-2454598
(-)
cobalamin
2453753-2454182 (-)
APA22_22540
APA22_22540
Operon
DOOR ID:
1341151
APA22_22510
(cbiA)
,
APA22_22520
(cobN)
,
APA22_22530
(cobW)
,
APA22_22540
View Structure
8
2625453-2625538
(-)
glycine
2624156-2625293 (-)
APA22_24240
APA22_24240
Operon
DOOR ID:
1341184
APA22_24220,
APA22_24230,
APA22_24240
View Structure
9
2733991-2734144
(+)
TPP
2734227-2736105 (+)
thiC
APA22_25230
Single gene
DOOR ID:
3499484
APA22_25230
(thiC)
View Structure
10
2743313-2743534
(-)
cobalamin
2741601-2743194 (-)
oprB
APA22_25310
Single gene
DOOR ID:
3499487
APA22_25310
(oprB)
View Structure
Genome:
Acetobacter pasteurianus IFO 3283-22
(
NC_017125.1
);
Phylum:
Alphaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017125.1";i:2;s:36:"Acetobacter pasteurianus IFO 3283-22";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"440659-440891";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"441025-443185";i:10;s:1:"+";i:11;s:11:"APA22_04230";i:12;s:0:"";i:13;s:11:"APA22_04230";i:14;s:6:"Operon";i:15;s:7:"1340785";i:16;s:54:"APA22_04260;APA22_04250(fecCD);APA22_04240;APA22_04230";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017125.1";i:2;s:36:"Acetobacter pasteurianus IFO 3283-22";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1403383-1403502";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1403533-1404364";i:10;s:1:"+";i:11;s:11:"APA22_13250";i:12;s:0:"";i:13;s:11:"APA22_13250";i:14;s:11:"Single gene";i:15;s:7:"3499035";i:16;s:11:"APA22_13250";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017125.1";i:2;s:36:"Acetobacter pasteurianus IFO 3283-22";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1587794-1587976";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1587198-1587789";i:10;s:1:"-";i:11;s:11:"APA22_14770";i:12;s:0:"";i:13;s:11:"APA22_14770";i:14;s:11:"Single gene";i:15;s:7:"3499096";i:16;s:11:"APA22_14770";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017125.1";i:2;s:36:"Acetobacter pasteurianus IFO 3283-22";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1996257-1996336";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"1996446-1997655";i:10;s:1:"+";i:11;s:11:"APA22_18390";i:12;s:0:"";i:13;s:11:"APA22_18390";i:14;s:11:"Single gene";i:15;s:7:"3499250";i:16;s:11:"APA22_18390";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017125.1";i:2;s:36:"Acetobacter pasteurianus IFO 3283-22";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2019172-2019318";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2018019-2019072";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:11:"APA22_18580";i:14;s:6:"Operon";i:15;s:7:"1341073";i:16;s:77:"APA22_18530;APA22_18540;APA22_18550;APA22_18560;APA22_18570;APA22_18580(ribD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017125.1";i:2;s:36:"Acetobacter pasteurianus IFO 3283-22";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2432260-2432498";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2432539-2433004";i:10;s:1:"+";i:11;s:11:"APA22_22360";i:12;s:0:"";i:13;s:11:"APA22_22360";i:14;s:11:"Single gene";i:15;s:7:"3499384";i:16;s:11:"APA22_22360";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017125.1";i:2;s:36:"Acetobacter pasteurianus IFO 3283-22";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2454361-2454598";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2453753-2454182";i:10;s:1:"-";i:11;s:11:"APA22_22540";i:12;s:0:"";i:13;s:11:"APA22_22540";i:14;s:6:"Operon";i:15;s:7:"1341151";i:16;s:65:"APA22_22510(cbiA);APA22_22520(cobN);APA22_22530(cobW);APA22_22540";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017125.1";i:2;s:36:"Acetobacter pasteurianus IFO 3283-22";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2625453-2625538";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2624156-2625293";i:10;s:1:"-";i:11;s:11:"APA22_24240";i:12;s:0:"";i:13;s:11:"APA22_24240";i:14;s:6:"Operon";i:15;s:7:"1341184";i:16;s:35:"APA22_24220;APA22_24230;APA22_24240";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017125.1";i:2;s:36:"Acetobacter pasteurianus IFO 3283-22";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2733991-2734144";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2734227-2736105";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:0:"";i:13;s:11:"APA22_25230";i:14;s:11:"Single gene";i:15;s:7:"3499484";i:16;s:17:"APA22_25230(thiC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017125.1";i:2;s:36:"Acetobacter pasteurianus IFO 3283-22";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2743313-2743534";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2741601-2743194";i:10;s:1:"-";i:11;s:4:"oprB";i:12;s:0:"";i:13;s:11:"APA22_25310";i:14;s:11:"Single gene";i:15;s:7:"3499487";i:16;s:17:"APA22_25310(oprB)";i:17;s:0:"";i:18;s:15:"View Structure ";}}