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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
440659-440891
(+)
cobalamin
441025-443185 (+)
APA07_04230
APA07_04230
Operon
DOOR ID:
1001418
APA07_04230,
APA07_04240,
APA07_04250
(fecCD)
,
APA07_04260
View Structure
2
1402366-1402485
(+)
TPP
1402516-1403347 (+)
APA07_13250
APA07_13250
Single gene
DOOR ID:
3497904
APA07_13250
View Structure
3
1586777-1586959
(-)
yybP-ykoY
1586181-1586772 (-)
APA07_14770
APA07_14770
Single gene
DOOR ID:
3497965
APA07_14770
View Structure
4
1993589-1993668
(+)
sam-alpha
1993778-1994987 (+)
APA07_18390
APA07_18390
Single gene
DOOR ID:
3498118
APA07_18390
View Structure
5
2016504-2016650
(-)
FMN
2015351-2016404 (-)
ribD
APA07_18580
Operon
DOOR ID:
1001707
APA07_18530,
APA07_18540,
APA07_18550,
APA07_18560,
APA07_18570,
APA07_18580
(ribD)
View Structure
6
2429622-2429860
(+)
cobalamin
2429901-2430366 (+)
APA07_22360
APA07_22360
Single gene
DOOR ID:
3498252
APA07_22360
View Structure
7
2451723-2451960
(-)
cobalamin
2451115-2451544 (-)
APA07_22540
APA07_22540
Operon
DOOR ID:
1001785
APA07_22510
(cbiA)
,
APA07_22520
(cobN)
,
APA07_22530
(cobW)
,
APA07_22540
View Structure
8
2622815-2622900
(-)
glycine
2621518-2622655 (-)
APA07_24240
APA07_24240
Operon
DOOR ID:
1001818
APA07_24220,
APA07_24230,
APA07_24240
View Structure
9
2732768-2732921
(+)
TPP
2733004-2734882 (+)
thiC
APA07_25230
Single gene
DOOR ID:
3498353
APA07_25230
(thiC)
View Structure
10
2742090-2742311
(-)
cobalamin
2740378-2741971 (-)
oprB
APA07_25310
Single gene
DOOR ID:
3498356
APA07_25310
(oprB)
View Structure
Genome:
Acetobacter pasteurianus IFO 3283-07
(
NC_017121.1
);
Phylum:
Alphaproteobacteria
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