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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
440659-440891
(+)
cobalamin
441025-443185 (+)
APA32_04230
APA32_04230
Operon
DOOR ID:
1340242
APA32_04260,
APA32_04250
(fecCD)
,
APA32_04240,
APA32_04230
View Structure
2
1402366-1402485
(+)
TPP
1402516-1403347 (+)
APA32_13250
APA32_13250
Single gene
DOOR ID:
3496585
APA32_13250
View Structure
3
1586777-1586959
(-)
yybP-ykoY
1586181-1586772 (-)
APA32_14770
APA32_14770
Single gene
DOOR ID:
3496646
APA32_14770
View Structure
4
1993577-1993656
(+)
sam-alpha
1993766-1994975 (+)
APA32_18390
APA32_18390
Single gene
DOOR ID:
3496799
APA32_18390
View Structure
5
2016492-2016638
(-)
FMN
2015339-2016392 (-)
ribD
APA32_18580
Operon
DOOR ID:
1340530
APA32_18530,
APA32_18540,
APA32_18550,
APA32_18560,
APA32_18570,
APA32_18580
(ribD)
View Structure
6
2429635-2429873
(+)
cobalamin
2429914-2430379 (+)
APA32_22360
APA32_22360
Single gene
DOOR ID:
3496934
APA32_22360
View Structure
7
2451736-2451973
(-)
cobalamin
2451128-2451557 (-)
APA32_22540
APA32_22540
Operon
DOOR ID:
1340608
APA32_22510
(cbiA)
,
APA32_22520
(cobN)
,
APA32_22530
(cobW)
,
APA32_22540
View Structure
8
2622828-2622913
(-)
glycine
2621531-2622668 (-)
APA32_24240
APA32_24240
Operon
DOOR ID:
1340641
APA32_24220,
APA32_24230,
APA32_24240
View Structure
9
2731366-2731519
(+)
TPP
2731602-2733480 (+)
thiC
APA32_25230
Single gene
DOOR ID:
3497034
APA32_25230
(thiC)
View Structure
10
2740688-2740909
(-)
cobalamin
2738976-2740569 (-)
oprB
APA32_25310
Single gene
DOOR ID:
3497037
APA32_25310
(oprB)
View Structure
Genome:
Acetobacter pasteurianus IFO 3283-32
(
NC_017111.1
);
Phylum:
Alphaproteobacteria
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