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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
440659-440891
(+)
cobalamin
441025-443185 (+)
APA12_04230
APA12_04230
Operon
DOOR ID:
1000573
APA12_04230,
APA12_04240,
APA12_04250
(fecCD)
,
APA12_04260
View Structure
2
1402366-1402485
(+)
TPP
1402516-1403347 (+)
APA12_13250
APA12_13250
Single gene
DOOR ID:
3495719
APA12_13250
View Structure
3
1586777-1586959
(-)
yybP-ykoY
1586181-1586772 (-)
APA12_14770
APA12_14770
Single gene
DOOR ID:
3495758
APA12_14770
View Structure
4
1993589-1993668
(+)
sam-alpha
1993778-1994987 (+)
APA12_18390
APA12_18390
Operon
DOOR ID:
1000868
APA12_18390,
APA12_18400
(apaG)
,
APA12_18410
View Structure
5
2016504-2016650
(-)
FMN
2015351-2016404 (-)
ribD
APA12_18580
Operon
DOOR ID:
1000872
APA12_18530,
APA12_18540,
APA12_18550,
APA12_18560,
APA12_18570,
APA12_18580
(ribD)
View Structure
6
2429617-2429855
(+)
cobalamin
2429896-2430361 (+)
APA12_22360
APA12_22360
Operon
DOOR ID:
1000949
APA12_22360,
APA12_22370,
APA12_22380,
APA12_22390
View Structure
7
2451718-2451955
(-)
cobalamin
2451110-2451539 (-)
APA12_22540
APA12_22540
Operon
DOOR ID:
1000952
APA12_22480
(cobQ)
,
APA12_22490
(cobOP)
,
APA12_22500,
APA12_22510
(cbiA)
,
APA12_22520
(cobN)
,
APA12_22530
(cobW)
,
APA12_22540
View Structure
8
2622810-2622895
(-)
glycine
2621513-2622650 (-)
APA12_24240
APA12_24240
Operon
DOOR ID:
1000989
APA12_24220,
APA12_24230,
APA12_24240
View Structure
9
2731348-2731501
(+)
TPP
2731584-2733462 (+)
thiC
APA12_25230
Single gene
DOOR ID:
3495957
APA12_25230
(thiC)
View Structure
10
2740670-2740891
(-)
cobalamin
2738958-2740551 (-)
oprB
APA12_25310
Operon
DOOR ID:
1001015
APA12_25290,
APA12_25300,
APA12_25310
(oprB)
View Structure
Genome:
Acetobacter pasteurianus IFO 3283-12
(
NC_017108.1
);
Phylum:
Alphaproteobacteria
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