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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
440659-440891
(+)
cobalamin
441025-443185 (+)
APA03_04230
APA03_04230
Operon
DOOR ID:
999906
APA03_04230,
APA03_04240,
APA03_04250
(fecCD)
,
APA03_04260
View Structure
2
1403383-1403502
(+)
TPP
1403533-1404364 (+)
APA03_13250
APA03_13250
Single gene
DOOR ID:
3494510
APA03_13250
View Structure
3
1587794-1587976
(-)
yybP-ykoY
1587198-1587789 (-)
APA03_14770
APA03_14770
Single gene
DOOR ID:
3494571
APA03_14770
View Structure
4
1996262-1996341
(+)
sam-alpha
1996451-1997660 (+)
APA03_18390
APA03_18390
Single gene
DOOR ID:
3494725
APA03_18390
View Structure
5
2019177-2019323
(-)
FMN
2018024-2019077 (-)
ribD
APA03_18580
Operon
DOOR ID:
1000195
APA03_18530,
APA03_18540,
APA03_18550,
APA03_18560,
APA03_18570,
APA03_18580
(ribD)
View Structure
6
2432280-2432518
(+)
cobalamin
2432559-2433024 (+)
APA03_22360
APA03_22360
Single gene
DOOR ID:
3494859
APA03_22360
View Structure
7
2454381-2454618
(-)
cobalamin
2453773-2454202 (-)
APA03_22540
APA03_22540
Operon
DOOR ID:
1000273
APA03_22510
(cbiA)
,
APA03_22520
(cobN)
,
APA03_22530
(cobW)
,
APA03_22540
View Structure
8
2625473-2625558
(-)
glycine
2624176-2625313 (-)
APA03_24240
APA03_24240
Operon
DOOR ID:
1000306
APA03_24220,
APA03_24230,
APA03_24240
View Structure
9
2734011-2734164
(+)
TPP
2734247-2736125 (+)
thiC
APA03_25230
Single gene
DOOR ID:
3494958
APA03_25230
(thiC)
View Structure
10
2743333-2743554
(-)
cobalamin
2741621-2743214 (-)
oprB
APA03_25310
Single gene
DOOR ID:
3494961
APA03_25310
(oprB)
View Structure
Genome:
Acetobacter pasteurianus IFO 3283-03
(
NC_017100.1
);
Phylum:
Alphaproteobacteria
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