About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
236967-237078
(-)
TPP
235871-236855 (-)
Ferpe_0223
ABC transporter periplasmic binding protein; thiB subfamily
Ferpe_0223
Single gene
DOOR ID:
3492711
Ferpe_0223
View Structure
2
324056-324239
(+)
cobalamin
324299-325367 (+)
Ferpe_0305
Succinyl-CoA synthetase; beta subunit
Ferpe_0305
Operon
DOOR ID:
998934
Ferpe_0305,
Ferpe_0306,
Ferpe_0307
View Structure
3
679988-680100
(+)
TPP
680198-681026 (+)
Ferpe_0640
Thiamine thiazole synthase
Ferpe_0640
Operon
DOOR ID:
999004
Ferpe_0640,
Ferpe_0641,
Ferpe_0642,
Ferpe_0643
View Structure
4
844465-844633
(+)
cobalamin
844691-845600 (+)
Ferpe_0795
ABC-type Fe3+-hydroxamate transport system; periplasmic component
Ferpe_0795
Operon
DOOR ID:
999035
Ferpe_0795,
Ferpe_0796
View Structure
5
846690-846817
(+)
FMN
846923-848084 (+)
Ferpe_0797
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Ferpe_0797
Operon
DOOR ID:
999036
Ferpe_0797,
Ferpe_0798,
Ferpe_0799,
Ferpe_0800,
Ferpe_0801,
Ferpe_0802
View Structure
6
1751896-1752072
(+)
cobalamin
1752126-1753077 (-)
Ferpe_1699
Transposase
Ferpe_1699
Single gene
DOOR ID:
3492891
Ferpe_1699
View Structure
Genome:
Fervidobacterium pennivorans DSM 9078
(
NC_017095.1
);
Phylum:
Thermotogae
a:7:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017095.1";i:2;s:38:"Fervidobacterium pennivorans DSM 9078 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:13:"236967-237078";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"235871-236855";i:10;s:1:"-";i:11;s:10:"Ferpe_0223";i:12;s:59:"ABC transporter periplasmic binding protein; thiB subfamily";i:13;s:10:"Ferpe_0223";i:14;s:11:"Single gene";i:15;s:7:"3492711";i:16;s:10:"Ferpe_0223";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017095.1";i:2;s:38:"Fervidobacterium pennivorans DSM 9078 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:13:"324056-324239";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"324299-325367";i:10;s:1:"+";i:11;s:10:"Ferpe_0305";i:12;s:37:"Succinyl-CoA synthetase; beta subunit";i:13;s:10:"Ferpe_0305";i:14;s:6:"Operon";i:15;s:6:"998934";i:16;s:32:"Ferpe_0305;Ferpe_0306;Ferpe_0307";i:17;s:37:"tricarboxylic acid cycle [GO:0006099]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017095.1";i:2;s:38:"Fervidobacterium pennivorans DSM 9078 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:13:"679988-680100";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"680198-681026";i:10;s:1:"+";i:11;s:10:"Ferpe_0640";i:12;s:27:"Thiamine thiazole synthase ";i:13;s:10:"Ferpe_0640";i:14;s:6:"Operon";i:15;s:6:"999004";i:16;s:43:"Ferpe_0640;Ferpe_0641;Ferpe_0642;Ferpe_0643";i:17;s:142:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]; thiazole biosynthetic process [GO:0052837]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017095.1";i:2;s:38:"Fervidobacterium pennivorans DSM 9078 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:13:"844465-844633";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"844691-845600";i:10;s:1:"+";i:11;s:10:"Ferpe_0795";i:12;s:65:"ABC-type Fe3+-hydroxamate transport system; periplasmic component";i:13;s:10:"Ferpe_0795";i:14;s:6:"Operon";i:15;s:6:"999035";i:16;s:21:"Ferpe_0795;Ferpe_0796";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017095.1";i:2;s:38:"Fervidobacterium pennivorans DSM 9078 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:13:"846690-846817";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"846923-848084";i:10;s:1:"+";i:11;s:10:"Ferpe_0797";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:10:"Ferpe_0797";i:14;s:6:"Operon";i:15;s:6:"999036";i:16;s:65:"Ferpe_0797;Ferpe_0798;Ferpe_0799;Ferpe_0800;Ferpe_0801;Ferpe_0802";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017095.1";i:2;s:38:"Fervidobacterium pennivorans DSM 9078 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1751896-1752072";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1752126-1753077";i:10;s:1:"-";i:11;s:10:"Ferpe_1699";i:12;s:11:"Transposase";i:13;s:10:"Ferpe_1699";i:14;s:11:"Single gene";i:15;s:7:"3492891";i:16;s:10:"Ferpe_1699";i:17;s:40:"transposition; DNA-mediated [GO:0006313]";i:18;s:15:"View Structure ";}}