Genome: Rubrivivax gelatinosus IL144 (NC_017075.1); Phylum: Betaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 266891-266980 (-)SAH264148-266872 (-)metH

Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)		RGE_02540Operon

DOOR ID: 1238355		RGE_02550,
RGE_02540 (metH)		 View Structure
2 528389-528469 (-)SAH526868-528305 (-)ahcY

Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)		RGE_04990Operon

DOOR ID: 1238412		RGE_04990 (ahcY),
RGE_04980 (metF)		 View Structure
3 961139-961323 (-)yybP-ykoY960565-961135 (-)RGE_09210

RGE_09210Single gene

DOOR ID: 3483017		RGE_09210 View Structure
4 1546405-1546655 (+)cobalamin1546794-1548654 (+)RGE_15030

Putative TonB-dependent receptor		RGE_15030Operon

DOOR ID: 1238634		RGE_15030,
RGE_15040 (cobU),
RGE_15050,
RGE_15060,
RGE_15070,
RGE_15080 (cobQ),
RGE_15090 (cobT),
RGE_15100 (cobS),
RGE_15110 (cobC),
RGE_15120		 View Structure
5 1644804-1644920 (-)glycine1643623-1644751 (-)gcvT

Aminomethyltransferase (0)		RGE_15960Operon

DOOR ID: 1238656		RGE_15930 (sdaA),
RGE_15940 (gcvP),
RGE_15950 (gcvH),
RGE_15960 (gcvT)		 View Structure
6 2047320-2047414 (+)c-di-GMP-I2047938-2048250 (+)lfiE

Flagellar hook-basal body complex protein FliE		RGE_19610operon

DOOR ID: 1238734		RGE_19610 (lfiE),
RGE_19620 (lfiF),
RGE_19630 (lfiG),
RGE_19640 (lfiH),
RGE_19650 (lfiI),
RGE_19660,
RGE_19670 (lafB),
RGE_19680 (lafC),
RGE_19690,
RGE_19700 (lafE),
RGE_19710 (lafF),
RGE_19720 (lafS),
RGE_19730 (lafT),
RGE_19740 (lafU),
RGE_19750 (lfgM),
RGE_19760 (lfgN),
RGE_19770		 View Structure
7 2338473-2338559 (+)c-di-GMP-I2338618-2341351 (+)RGE_22320

Putative S8A family peptidase		RGE_22320single gene

DOOR ID: 3483347		RGE_22320 View Structure
8 2461526-2461688 (-)TPP2459299-2461462 (-)RGE_23390

Putative TonB-dependent receptor		RGE_23390Single gene

DOOR ID: 3483376		RGE_23390 View Structure
9 2548317-2548382 (+)SAH2550560-2551565 (+)RGE_24180

Dehydrogenase		RGE_24180Single gene

DOOR ID: 3483402		RGE_24180 View Structure
10 2578975-2579119 (+)FMN2579211-2579874 (+)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)		RGE_24460Operon

DOOR ID: 1238834		RGE_24460 (ribB),
RGE_24470		 View Structure
11 3064101-3064333 (-)cobalamin3063048-3064032 (-)RGE_28910

Putative ABC transporter substrate binding protein		RGE_28910Operon

DOOR ID: 1238931		RGE_28870,
RGE_28880,
RGE_28890,
RGE_28900 (cobD),
RGE_28910		 View Structure
12 3067467-3067565 (-)glycine3066159-3067308 (-)RGE_28940

Putative high-affinity branched-chain amino acid ABC transporter substrate binding protein		RGE_28940Single gene

DOOR ID: 3483508		RGE_28940 View Structure
13 3804803-3804911 (-)TPP3802800-3804711 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		RGE_35570Single gene

DOOR ID: 3483675		RGE_35570 (thiC) View Structure
14 4182608-4182726 (+)ZMP-ZTP4182780-4184031 (+)glyA

Serine hydroxymethyltransferase (SHMT) (Serine methylase) 		RGE_38960Operon

DOOR ID: 1239143		RGE_38960 (glyA),
RGE_38970 (nrdR)		 View Structure
15 4475385-4475498 (-)TPP4474489-4475320 (-)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		RGE_41700Operon

DOOR ID: 1239197		RGE_41630,
RGE_41640,
RGE_41650,
RGE_41660 (dsbC),
RGE_41670,
RGE_41680 (thiD),
RGE_41690 (thiE),
RGE_41700 (thiM)		 View Structure
16 4773030-4773289 (-)cobalamin4772209-4772860 (-)RGE_44550

RGE_44550Operon

DOOR ID: 1239255		RGE_44510,
RGE_44520 (cobN),
RGE_44530 (cobW),
RGE_44540 (cobO),
RGE_44550		 View Structure
17 4773325-4773550 (+)cobalamin4773616-4774399 (+)RGE_44560

RGE_44560Operon

DOOR ID: 1239256		RGE_44560,
RGE_44570,
RGE_44580,
RGE_44590		 View Structure
18 4861928-4862005 (-)sam-alpha4860741-4861896 (-)metX

Homoserine O-succinyltransferase (HST) (6) (Homoserine transsuccinylase) (HTS)		RGE_45380Operon

DOOR ID: 1239276		RGE_45360,
RGE_45370 (metW),
RGE_45380 (metX)		 View Structure