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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
120376-120544
(+)
yybP-ykoY
120626-121130 (+)
MARHY0105
Putative membrane protein
MARHY0105
Operon
DOOR ID:
1237506
MARHY0105,
MARHY0104,
MARHY0103,
MARHY0102
View Structure
2
239286-239495
(+)
cobalamin
239637-241458 (+)
MARHY0216
Putative vitamin B12 transporter BtuB; tonB-dependent receptor family
MARHY0216
Operon
DOOR ID:
1237530
MARHY0219,
MARHY0218
(btuC)
,
MARHY0217,
MARHY0216
View Structure
3
699907-700020
(+)
TPP
700103-701981 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
MARHY0673
Single gene
DOOR ID:
3480871
MARHY0673
(thiC)
View Structure
4
2104879-2104970
(+)
TPP
2105018-2106023 (+)
tbpA
Thiamin transporter subunit periplasmic-binding component of ABC superfamily
MARHY2063
Operon
DOOR ID:
1237924
MARHY2063
(tbpA)
,
MARHY2064
(thiP)
,
MARHY2065
(thiQ)
,
MARHY2066,
MARHY2067,
MARHY2068,
MARHY2069
View Structure
5
3935621-3935818
(-)
cobalamin
3932727-3935586 (-)
nrdA
Ribonucleoside-diphosphate reductase
MARHY3806
Operon
DOOR ID:
1238282
MARHY3805
(nrdB)
,
MARHY3806
(nrdA)
View Structure
Genome:
Marinobacter hydrocarbonoclasticus ATCC 49840
(
NC_017067.1
);
Phylum:
Gammaproteobacteria
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