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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
620240-620316
(+)
sam-alpha
620361-621558 (+)
RSPPHO_00479
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
RSPPHO_00479
Single gene
DOOR ID:
3475757
RSPPHO_00479
View Structure
2
1017558-1017770
(-)
cobalamin
1016447-1016756 (-)
RSPPHO_00809
Cobalt transport protein CbiN (Energy-coupling factor transporter probable substrate-capture protein CbiN) (ECF transporter S component CbiN)
RSPPHO_00809
Operon
DOOR ID:
1236165
RSPPHO_00810,
RSPPHO_00809,
RSPPHO_00808,
RSPPHO_00807
View Structure
3
1733611-1733729
(-)
TPP
1731862-1733557 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
RSPPHO_01438
Single gene
DOOR ID:
3476106
RSPPHO_01438
(thiC)
View Structure
4
2680073-2680249
(+)
yybP-ykoY
2681238-2681526 (-)
RSPPHO_02243
RSPPHO_02243
Single gene
DOOR ID:
3476403
RSPPHO_02243
View Structure
5
2888432-2888534
(-)
glycine
2886729-2887110 (-)
gcvH
Glycine cleavage system H protein
RSPPHO_02417
Operon
DOOR ID:
1236526
RSPPHO_02418,
RSPPHO_02417
(gcvH)
View Structure
6
3444703-3444904
(-)
cobalamin
3442568-3444533 (-)
RSPPHO_02872
TonB-dependent receptor
RSPPHO_02872
Operon
DOOR ID:
1236619
RSPPHO_02872,
RSPPHO_02871,
RSPPHO_02870
(hmuU2)
View Structure
Genome:
Rhodospirillum photometricum DSM 122
(
NC_017059.1
);
Phylum:
Alphaproteobacteria
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